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Clostridium perfringens str. 13 (cper0)
Gene : truA.2
DDBJ      :truA         tRNA-pseudouridine synthase I
Swiss-Prot:TRUA2_CLOPE  RecName: Full=tRNA pseudouridine synthase A 2;         EC=5.4.99.12;AltName: Full=tRNA-uridine isomerase I 2;AltName: Full=tRNA pseudouridylate synthase I 2;

Homologs  Archaea  38/68 : Bacteria  885/915 : Eukaryota  117/199 : Viruses  0/175   --->[See Alignment]
d.265.1
:244 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   4->218 2nqpD PDBj 5e-37 34.4 %
:RPS:PDB   1->244 1dj0A PDBj 3e-77 33.6 %
:RPS:SCOP  1->244 1dj0A  d.265.1.1 * 1e-77 33.6 %
:HMM:SCOP  1->244 1dj0A_ d.265.1.1 * 3.2e-79 42.6 %
:RPS:PFM   6->103 PF01416 * PseudoU_synth_1 2e-09 41.8 %
:RPS:PFM   152->213 PF01416 * PseudoU_synth_1 4e-05 35.4 %
:HMM:PFM   7->103 PF01416 * PseudoU_synth_1 9.9e-16 38.0 79/105  
:HMM:PFM   143->244 PF01416 * PseudoU_synth_1 1e-24 32.7 101/105  
:BLT:SWISS 1->244 TRUA2_CLOPE e-142 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID BAB82077.1 GT:GENE truA.2 GT:PRODUCT tRNA-pseudouridine synthase I GT:DATABASE GIB00075CH01 GT:ORG cper0 GB:ACCESSION GIB00075CH01 GB:LOCATION complement(2732995..2733729) GB:FROM 2732995 GB:TO 2733729 GB:DIRECTION - GB:GENE truA GB:PRODUCT tRNA-pseudouridine synthase I GB:NOTE 244 aa, similar to sp:TRUA_BACSP TRNA PSEUDOURIDINE SYNTHASE A (EC 4.2.1.70) (PSEUDOURIDYLATE SYNTHASE I) (PSEUDOURIDINE SYNTHASE I) (URACIL HYDROLYASE) from Bacillus sp. (244 aa); 43.4% identity in 244 aa overlap CPE2371 GB:PROTEIN_ID BAB82077.1 LENGTH 244 SQ:AASEQ MRNIKLTIEYDGTSYFGWQKQPIGNTIQQKVEEAIKKVTKEEVEILGSSRTDSGVHAKAYVANFKTNSNIPGKNFKAALNSKLPKDIVIINSEEVAEDFHARYMTTGKTYCYTILNREEPPALERNYVYHVKKQLDVESMKEACKYFLGKHDFKAFQRPGGTVKTSVRTITDIHIETEGNKIKIYVSADGFLYNMVRLIVGTLLKVGRGKEKPEYIKEVIDSGDRKKAGICVPPTGLCLEKVFY GT:EXON 1|1-244:0| SW:ID TRUA2_CLOPE SW:DE RecName: Full=tRNA pseudouridine synthase A 2; EC=5.4.99.12;AltName: Full=tRNA-uridine isomerase I 2;AltName: Full=tRNA pseudouridylate synthase I 2; SW:GN Name=truA2; Synonyms=truA; OrderedLocusNames=CPE2371; SW:KW Complete proteome; Isomerase; tRNA processing. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->244|TRUA2_CLOPE|e-142|100.0|244/244| GO:SWS:NREP 2 GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| BL:PDB:NREP 1 BL:PDB:REP 4->218|2nqpD|5e-37|34.4|215/263| RP:PDB:NREP 1 RP:PDB:REP 1->244|1dj0A|3e-77|33.6|244/264| RP:PFM:NREP 2 RP:PFM:REP 6->103|PF01416|2e-09|41.8|91/112|PseudoU_synth_1| RP:PFM:REP 152->213|PF01416|4e-05|35.4|62/112|PseudoU_synth_1| HM:PFM:NREP 2 HM:PFM:REP 7->103|PF01416|9.9e-16|38.0|79/105|PseudoU_synth_1| HM:PFM:REP 143->244|PF01416|1e-24|32.7|101/105|PseudoU_synth_1| GO:PFM:NREP 8 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF01416|IPR020097| GO:PFM GO:0003723|"GO:RNA binding"|PF01416|IPR020097| GO:PFM GO:0009451|"GO:RNA modification"|PF01416|IPR020097| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF01416|IPR020097| GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF01416|IPR020097| GO:PFM GO:0003723|"GO:RNA binding"|PF01416|IPR020097| GO:PFM GO:0009451|"GO:RNA modification"|PF01416|IPR020097| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF01416|IPR020097| RP:SCP:NREP 1 RP:SCP:REP 1->244|1dj0A|1e-77|33.6|244/264|d.265.1.1| HM:SCP:REP 1->244|1dj0A_|3.2e-79|42.6|244/264|d.265.1.1|1/1|Pseudouridine synthase| OP:NHOMO 1218 OP:NHOMOORG 1040 OP:PATTERN ------------------1111111--111-1-1111-1111111-111111111111111-1----- 111-111111111111111-111111111111111111111111-1111111111111111111111111111111111111111111111111-111111112211112-1111111-11111211111111111111111111111111111111111111111111111111111111111111111-111-2222222222222211111122211111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111321122222221211211222232111-321111111121111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111212111111111111111111122222121111111111111111111111111111111111111111111111111111-111111--111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111-111111111111111111111111111111111111111111111111111111-1111111111111111---1--11----111--1111111111111111 1111331-4111--------------------------------------------------1---1-111111-1-111-11-11---1-------------2221153222231122--22134222252-222111221221121222-112222233-2211-222911122333H333123123-433222324 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 244 STR:RPRED 100.0 SQ:SECSTR cEEEEEEEEEccTTccccccTTccccHHHHHHHHHHHHHTccccEEEcccccTTcEEEEEEEEEEEcccccHHHHHHHHHHTccTTEEEEEEEEccTTccTTTTccEEEEEEEEEcccccccTTTTccEEccccccHHHHHHHHGGGcEEEEcGGGccTTccccccEEEEEEEEEEEETTEEEEEEEEccccTTHHHHHHHHHHHHHTTcccTTHHHHHHHHccGGGcccccccTTEEEEEEEc DISOP:02AL 244-245| PSIPRED ccEEEEEEEEccccccccEEccccccHHHHHHHHHHHHccccEEEEEEEcccccccccccEEEEEEcccccHHHHHHHHHHHccccEEEEEEEEccccccccccccEEEEEEEEEccccccHHHcccEEEEcccccHHHHHHHHHHHccccccHHHHcccccccccEEEEEEEEEEEEccEEEEEEEEcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccccEEEEEEc //