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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO48632.1
DDBJ      :             Peptidoglycan-binding LysM
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  27/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.7.1
:567 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   518->562 2djpA PDBj 1e-13 31.8 %
:RPS:SCOP  518->562 1e0gA  d.7.1.1 * 9e-13 31.0 %
:HMM:SCOP  515->562 1y7mA2 d.7.1.1 * 2.4e-09 43.5 %
:RPS:PFM   226->320 PF03971 * IDH 5e-04 26.1 %
:RPS:PFM   518->552 PF01476 * LysM 3e-06 42.9 %
:HMM:PFM   518->562 PF01476 * LysM 7.9e-19 47.7 44/44  
:BLT:SWISS 518->561 LYS_BPPZA 4e-07 47.7 %
:REPEAT 3|95->152|271->330|422->479
:REPEAT 3|28->94|177->269|354->421
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO48632.1 GT:GENE ABO48632.1 GT:PRODUCT Peptidoglycan-binding LysM GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 88299..90002 GB:FROM 88299 GB:TO 90002 GB:DIRECTION + GB:PRODUCT Peptidoglycan-binding LysM GB:NOTE PFAM: Peptidoglycan-binding LysM KEGG: ctc:CTC00280 hypothetical protein GB:PROTEIN_ID ABO48632.1 GB:DB_XREF GI:134050661 InterPro:IPR002482 LENGTH 567 SQ:AASEQ MVMRKRPKLKFRQNNDENENQQFETERIRVKQLIGENTEQTVIRDTVKLPYGYPDIEEILSIDTKVKLKKAEIIPNKVIVEGKLRFKVLYTAFEKDQSVHAFDEEIEFTDFIEVEGARPGMDAEIEFVVEDFSLKLSRSCEYDLTAVLQITAKITEDREVDAIIECPMGYNCETERMSLEQVVGSNTKQILIDDEFELPDERDFLVSDVLKCMCDVEITKVRVIKNKILFDGEVDMECLYAVERRADKGKHGHGEWHADKKGHGFEDPKEDKFGVHSFERTFKFSNFIEVEGAEQGMEAYVDAMVESCSLDITDVSDCKFSPLIVLKIKARVVEDREVDVVTDIEGADVDTVTLDMESLVAEECKQVIIRDAKETPAGKPDVDKVREITVGDVVIKDVDVIQDKVLIKGTVEFEILYIAMNERKSLHTIHRKVDFKTFIDVPGARPENEADIDVEVEWANVKLEKDCELLIEAVLKVCARVTETVEQDVVIGFTPRPTVPPTTLPPTTTCVPGTTFNYTIAKGDTLSKLAQRYGTTVQAIQAANPEITNPNMLNVGDVIKIPCVAKG GT:EXON 1|1-567:0| BL:SWS:NREP 1 BL:SWS:REP 518->561|LYS_BPPZA|4e-07|47.7|44/258| NREPEAT 2 REPEAT 3|95->152|271->330|422->479| REPEAT 3|28->94|177->269|354->421| SEG 13->26|qnndenenqqfete| SEG 102->115|fdeeieftdfieve| SEG 331->341|rvvedrevdvv| SEG 388->408|itvgdvvikdvdviqdkvlik| SEG 494->515|tprptvppttlpptttcvpgtt| RP:PDB:NREP 1 RP:PDB:REP 518->562|2djpA|1e-13|31.8|44/77| RP:PFM:NREP 2 RP:PFM:REP 226->320|PF03971|5e-04|26.1|92/735|IDH| RP:PFM:REP 518->552|PF01476|3e-06|42.9|35/44|LysM| HM:PFM:NREP 1 HM:PFM:REP 518->562|PF01476|7.9e-19|47.7|44/44|LysM| GO:PFM:NREP 4 GO:PFM GO:0004450|"GO:isocitrate dehydrogenase (NADP+) activity"|PF03971|IPR004436| GO:PFM GO:0006099|"GO:tricarboxylic acid cycle"|PF03971|IPR004436| GO:PFM GO:0055114|"GO:oxidation reduction"|PF03971|IPR004436| GO:PFM GO:0016998|"GO:cell wall macromolecule catabolic process"|PF01476|IPR018392| RP:SCP:NREP 1 RP:SCP:REP 518->562|1e0gA|9e-13|31.0|42/48|d.7.1.1| HM:SCP:REP 515->562|1y7mA2|2.4e-09|43.5|46/0|d.7.1.1|1/1|LysM domain| OP:NHOMO 28 OP:NHOMOORG 27 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111111111-1-1-111----11------2--111-1-1-11------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 44 STR:RPRED 7.8 SQ:SECSTR #####################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################################EcccTTccHHHHHHHHTccHHHHHHHHT#ccccccGGGcccEEEE##### DISOP:02AL 1-22,566-568| PSIPRED ccccccccEEEEccccccccccEEEEEEEEEEEEccccccccccEEEEEEcccccHHHEEEEccEEEEEEEEEcccEEEEEEEEEEEEEEEEEcccccccccccEEEEEEEEEEcccccccccEEEEEEEccccEEEEEEEEEEEEEEEEEEEEEcEEEEEEEEEcccccccccccEEEEEEEEEEEEEEEEEccEEccccccHHHHHHHHcccEEEEEEEEEEccEEEEEEEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEEEEcccccEEEccccccccEEEEEEEEEEEEEEcccccccEEEEEEEEEEEEEEEccccEEEEEEcccccccHHEEEEHHHccccEEEEEEEEEEcccccccccEEEEEEEEEEEEEEEEEEccEEEEEEEEEEEEEEEEEcccccEEEEccccccEEEEEccccccccEEEEEEEEcccEEEEEcccEEEEEEEEEcccEEEEEEEEEEEEcccccccccccccccccEEccccEEEEEEcccccHHHHHHHHcccHHHHHHHccccccccEEccccEEEEcccccc //