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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO48658.1
DDBJ      :             LSU ribosomal protein L25P
Swiss-Prot:RL25_DESRM   RecName: Full=50S ribosomal protein L25;AltName: Full=General stress protein CTC;

Homologs  Archaea  0/68 : Bacteria  570/915 : Eukaryota  5/199 : Viruses  0/175   --->[See Alignment]
b.53.1
:210 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->180 1vsaT PDBj 2e-25 34.4 %
:RPS:PDB   6->184 3d5bZ PDBj 2e-28 32.8 %
:RPS:SCOP  6->184 1feuA  b.53.1.1 * 4e-32 32.2 %
:HMM:SCOP  2->191 1feuA_ b.53.1.1 * 5e-50 41.6 %
:RPS:PFM   6->93 PF01386 * Ribosomal_L25p 9e-14 35.2 %
:HMM:PFM   6->93 PF01386 * Ribosomal_L25p 4.3e-29 37.5 88/88  
:BLT:SWISS 1->184 RL25_DESRM e-102 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO48658.1 GT:GENE ABO48658.1 GT:PRODUCT LSU ribosomal protein L25P GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 113676..114308 GB:FROM 113676 GB:TO 114308 GB:DIRECTION + GB:PRODUCT LSU ribosomal protein L25P GB:NOTE TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 PFAM: ribosomal protein L25 KEGG: mta:Moth_0078 ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 GB:PROTEIN_ID ABO48658.1 GB:DB_XREF GI:134050687 InterPro:IPR001021 LENGTH 210 SQ:AASEQ MADTALNANLRKTATKSIVKEIRNNGGIPGVVYGKHVGSMAISVDAKDLKNILGSVTGRNTLINMNINGSKQTVMVKSLQMDPMHQNIRHVDFQQVSENTKIRTVIPVQLVGTPKGVAMGGVIQHDLRSAEIECLPNRIPEAIQVDISGLEIGDTLSVSDLNLPPGVKILDHPHTTVVGLATIKAPEPAGQPEVPPEPAEEAKAKTIEKE GT:EXON 1|1-210:0| SW:ID RL25_DESRM SW:DE RecName: Full=50S ribosomal protein L25;AltName: Full=General stress protein CTC; SW:GN Name=rplY; Synonyms=ctc; OrderedLocusNames=Dred_0108; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->184|RL25_DESRM|e-102|100.0|184/210| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| SEG 185->209|apepagqpevppepaeeakaktiek| BL:PDB:NREP 1 BL:PDB:REP 22->180|1vsaT|2e-25|34.4|157/185| RP:PDB:NREP 1 RP:PDB:REP 6->184|3d5bZ|2e-28|32.8|174/188| RP:PFM:NREP 1 RP:PFM:REP 6->93|PF01386|9e-14|35.2|88/88|Ribosomal_L25p| HM:PFM:NREP 1 HM:PFM:REP 6->93|PF01386|4.3e-29|37.5|88/88|Ribosomal_L25p| GO:PFM:NREP 5 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF01386|IPR020055| GO:PFM GO:0005622|"GO:intracellular"|PF01386|IPR020055| GO:PFM GO:0005840|"GO:ribosome"|PF01386|IPR020055| GO:PFM GO:0006412|"GO:translation"|PF01386|IPR020055| GO:PFM GO:0008097|"GO:5S rRNA binding"|PF01386|IPR020055| RP:SCP:NREP 1 RP:SCP:REP 6->184|1feuA|4e-32|32.2|174/185|b.53.1.1| HM:SCP:REP 2->191|1feuA_|5e-50|41.6|185/185|b.53.1.1|1/1|Ribosomal protein L25-like| OP:NHOMO 590 OP:NHOMOORG 575 OP:PATTERN -------------------------------------------------------------------- 111-1111111111111----11111-----1111111111111111111111111-11111111-111-11111111----1111111111111111-1111111111111111111111111111-11111111---111111---1---1-------------1--1-------------11111111-11---------------111111---111111111111111111111111111111111111---------------------------------------------------------------------122-12222222222----211-11-112--11111111111111111--111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111-111111---11111111---------------------11111--------------------------------------------------------------------------------------------111111111111111----------------------1111111111111111111111---------1--------------1111111111111111111111111111111111--------------------------1111111111111 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1111---1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 179 STR:RPRED 85.2 SQ:SECSTR #####EccEEcccccHHHHHHHHHHTEEEEEEEcTTccEEEEEEEHHHHHHHHHHHTTTccEEEEcTTccEEEEEcccEEEETTTTEEEEEEEEEccccccEEEEEEEEEccccHHHHTTcccEEcccEEEEEEcTTcccccEEEcTTcccTTccEEGGGccccTTEEccccTTcEEEEccccc########################## DISOP:02AL 1-1,15-18,186-211| PSIPRED ccEEEEEEEEEcccccHHHHHHHHcccccEEEEccccccEEEEEcHHHHHHHHHcccccEEEEEEEEccEEEEEEEEEEEcccccccEEEEEEEEEccccEEEEEEEEEEEcccHHHccccEEEEEEEEEEEEEcHHHcccEEEEEEcccccccEEEEEEEEcccccEEEcccccEEEEEEccccccccccccccccHHHHHHHcccccc //