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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO48721.1
DDBJ      :             putative TIM-barrel protein, nifR3 family
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  844/915 : Eukaryota  194/199 : Viruses  0/175   --->[See Alignment]
c.1.4
:319 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->317 1vhnA PDBj 2e-43 38.1 %
:RPS:PDB   15->304 3c52B PDBj 2e-41 11.6 %
:RPS:SCOP  11->319 1vhnA  c.1.4.1 * 1e-69 35.9 %
:HMM:SCOP  10->319 1vhnA_ c.1.4.1 * 1.1e-97 46.0 %
:RPS:PFM   15->306 PF01207 * Dus 3e-77 49.5 %
:HMM:PFM   14->314 PF01207 * Dus 3.8e-108 49.5 299/310  
:BLT:SWISS 2->314 DUS1_BACSU 1e-74 45.2 %
:PROS 94->112|PS01136|UPF0034
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO48721.1 GT:GENE ABO48721.1 GT:PRODUCT putative TIM-barrel protein, nifR3 family GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 179819..180778 GB:FROM 179819 GB:TO 180778 GB:DIRECTION + GB:PRODUCT putative TIM-barrel protein, nifR3 family GB:NOTE TIGRFAM: putative TIM-barrel protein, nifR3 family PFAM: dihydrouridine synthase, DuS; dihydroorotate dehydrogenase KEGG: chy:CHY_2369 putative TIM-barrel protein, NifR3 family GB:PROTEIN_ID ABO48721.1 GB:DB_XREF GI:134050750 InterPro:IPR001269 InterPro:IPR001295 InterPro:IPR004652 LENGTH 319 SQ:AASEQ MQIGSVRLPNQVIAAPMAGVTDRAYRILAREQGCGLAVTEMISDLALLYANPRTYRMLDFRGETVPLSVQIFGSNPESMGKAAAIVVERGATIVDINMGCPTPKIVKNNEGSALMKTPQLAAKIVEAVVKSVPAVPVTVKIRKGWDEQSVNAVEFARLVEAAGASAVAVHGRTRSQFYSGKADWESIRKVKEALKIPVIGNGDIWCARDAAKMLELTGCDGVMVGRGAMGNPWIFREIVYYLKTGMELPCPSAQERVETAIRHLQLMVESKGEEVAVFEMRKHAAWYTKGMRGAARIRETINKSQSKKEIEDILRSLLD GT:EXON 1|1-319:0| BL:SWS:NREP 1 BL:SWS:REP 2->314|DUS1_BACSU|1e-74|45.2|312/333| PROS 94->112|PS01136|UPF0034|PDOC00874| SEG 125->140|veavvksvpavpvtvk| BL:PDB:NREP 1 BL:PDB:REP 18->317|1vhnA|2e-43|38.1|289/299| RP:PDB:NREP 1 RP:PDB:REP 15->304|3c52B|2e-41|11.6|276/295| RP:PFM:NREP 1 RP:PFM:REP 15->306|PF01207|3e-77|49.5|289/303|Dus| HM:PFM:NREP 1 HM:PFM:REP 14->314|PF01207|3.8e-108|49.5|299/310|Dus| GO:PFM:NREP 4 GO:PFM GO:0008033|"GO:tRNA processing"|PF01207|IPR001269| GO:PFM GO:0017150|"GO:tRNA dihydrouridine synthase activity"|PF01207|IPR001269| GO:PFM GO:0050660|"GO:FAD binding"|PF01207|IPR001269| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01207|IPR001269| RP:SCP:NREP 1 RP:SCP:REP 11->319|1vhnA|1e-69|35.9|301/305|c.1.4.1| HM:SCP:REP 10->319|1vhnA_|1.1e-97|46.0|302/305|c.1.4.1|1/1|FMN-linked oxidoreductases| OP:NHOMO 2058 OP:NHOMOORG 1043 OP:PATTERN -------------------------------------------------1112--------------1 111-111111111111111-11111111111111111111----11111111111111--1111111111-11111111111-1----222212111--111111211111111111111111121111111111111111---1-221122211222222222211222122122222221222111--1112222222222222222111122222-112-22111111111111111111111111----2111111111133111111111-1111111111111111111111111111111111111111111111111213111111111121112222111111111111111111111111-111-2222111-1-222112222122222222222221-11211211222122222212221212222222222222211111111111111121111111111111111111-1111111111111112222222222222222223222222222333322132232333333322222111133222222311112232222222112222122222122211112111111111111111111111111111111333333223323333333333333333333--21112------22332232222222222-2222222222222222222232333332222222222222222211222221-222222222222--121111122222323322233332332322333333333332333333333333333233222222222233333333233333111111111111111-1133222211111111211----1---1--------1-------1111111111-22 1211555-5231344342222322222222222222222222222233122232-221222133333323323333323333333334-3634443334311555424947374454111-341632318N4-64B2321423522431161151554458836441444444342568j7673363532435433432 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 317 STR:RPRED 99.4 SQ:SECSTR HHHHHEETHHHHHTccHHHHHHHHHHHTccEEEEEcccHHHHHHHHHHHHHHTccEEEEHcHHHHHHHHHHHHHHcTTccEEEEEEEEccHHHHHHHHHHTccEEEEccTTccHHHHHHHHHHHHHHHHHTTcEEEcEEEEEEcccccccccHHHHHHHHHHcccEEEEccccccccccccccHHHHHHHHHHHcccEEEcccccccHHHHHHHHHTHTTcccTTcccccHHHHHHHHHHTEHHTcEEEEEEEEEcHHHHHHHHHHHHHHHHHcTTcccHHHHHHHHHHHHHHHHHHHHHHHTccHHHHHHTTEEHH## DISOP:02AL 1-1| PSIPRED cEEccEEccccEEEcccccccHHHHHHHHHHccccEEEEccEEcHHHHcccHHHHHHHHccccccEEEEEEEcccHHHHHHHHHHHHHccccEEEEEcccccHHHcccccEEEEcccHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEcccHHcccccccHHHHHHHHHHccccEEEEcccccHHHHHHHHHHccccEEEEcHHHHHccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHcccHHHHHHHHHHHcc //