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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO48747.1
DDBJ      :             RNA polymerase, sigma-24 subunit, ECF subfamily
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  136/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:214 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->119 1ku2A PDBj 3e-08 31.6 %
:RPS:PDB   18->211 3dxjF PDBj 8e-19 19.0 %
:RPS:SCOP  27->100 1sigA  a.177.1.1 * 3e-14 28.4 %
:RPS:SCOP  120->205 1iw7F2  a.4.13.2 * 2e-11 22.6 %
:HMM:SCOP  17->106 1iw7F3 a.177.1.1 * 5.4e-22 36.7 %
:HMM:SCOP  120->211 1iw7F2 a.4.13.2 * 1.6e-10 29.7 %
:RPS:PFM   36->84 PF04542 * Sigma70_r2 2e-05 38.8 %
:HMM:PFM   36->105 PF04542 * Sigma70_r2 1.3e-15 31.4 70/71  
:HMM:PFM   170->205 PF08281 * Sigma70_r4_2 4.6e-12 44.4 36/54  
:BLT:SWISS 18->214 RPSH_BACLI 4e-90 81.2 %
:PROS 177->204|PS00622|HTH_LUXR_1
:PROS 60->73|PS00715|SIGMA70_1
:COIL

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO48747.1 GT:GENE ABO48747.1 GT:PRODUCT RNA polymerase, sigma-24 subunit, ECF subfamily GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 212832..213476 GB:FROM 212832 GB:TO 213476 GB:DIRECTION + GB:PRODUCT RNA polymerase, sigma-24 subunit, ECF subfamily GB:NOTE PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2 KEGG: mta:Moth_2479 sigma-24 (FecI-like) GB:PROTEIN_ID ABO48747.1 GB:DB_XREF GI:134050776 InterPro:IPR000792 InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR013249 LENGTH 214 SQ:AASEQ MNPNAQREVSGGYEIMVDEDVVEFAREGDNAALEYLINKYKNFVRAKARSYFLIGADREDIIQEGMIGLYKAIRDFRLDKLSSFRAFAELCITRQIITAIKTATRQKHIPLNSYVSLNKPIYDEDSDRTLLDVISGSKITDPEELIISREEFDDIEEKMGEILSSLEWKVLMSYLEGKSYQEIAEDLNRHVKSIDNALQRVKRKLERYLEKREV GT:EXON 1|1-214:0| BL:SWS:NREP 1 BL:SWS:REP 18->214|RPSH_BACLI|4e-90|81.2|197/223| PROS 177->204|PS00622|HTH_LUXR_1|PDOC00542| PROS 60->73|PS00715|SIGMA70_1|PDOC00592| COIL:NAA 24 COIL:NSEG 1 COIL:REGION 183->206| BL:PDB:NREP 1 BL:PDB:REP 2->119|1ku2A|3e-08|31.6|117/240| RP:PDB:NREP 1 RP:PDB:REP 18->211|3dxjF|8e-19|19.0|179/349| RP:PFM:NREP 1 RP:PFM:REP 36->84|PF04542|2e-05|38.8|49/70|Sigma70_r2| HM:PFM:NREP 2 HM:PFM:REP 36->105|PF04542|1.3e-15|31.4|70/71|Sigma70_r2| HM:PFM:REP 170->205|PF08281|4.6e-12|44.4|36/54|Sigma70_r4_2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| RP:SCP:NREP 2 RP:SCP:REP 27->100|1sigA|3e-14|28.4|74/305|a.177.1.1| RP:SCP:REP 120->205|1iw7F2|2e-11|22.6|84/100|a.4.13.2| HM:SCP:REP 17->106|1iw7F3|5.4e-22|36.7|90/184|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 120->211|1iw7F2|1.6e-10|29.7|91/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 149 OP:NHOMOORG 136 OP:PATTERN -------------------------------------------------------------------- -------------------------------------------------------------------------------------------------------------------------------------------1-------1-------------------------------------------411111111111111111111111111111111111111121--------------------1------1---1111-------------------------------------------------------11212111111111112111111111--2112122111121121111-1---------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------1-----------------1--------------------------------------------------------------------1---1----111------11-11----1-------------------------------------------------------------------------------------------------------------1111---1-1----------------1---------------------------1---11111--111-----------------------------1-1----------------------------1-11111111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 210 STR:RPRED 98.1 SQ:SECSTR #cTTTHHHHHHHHGEEEHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHGGGcHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHH### DISOP:02AL 1-4,8-10,213-215| PSIPRED ccccccHHHHcccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccc //