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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO48756.1
DDBJ      :             DNA-directed RNA polymerase, beta subunit
Swiss-Prot:RPOB_DESRM   RecName: Full=DNA-directed RNA polymerase subunit beta;         Short=RNAP subunit beta;         EC=2.7.7.6;AltName: Full=Transcriptase subunit beta;AltName: Full=RNA polymerase subunit beta;

Homologs  Archaea  68/68 : Bacteria  905/915 : Eukaryota  194/199 : Viruses  2/175   --->[See Alignment]
e.29.1
:1145 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->1074 1ynjC PDBj 0.0 56.3 %
:RPS:PDB   10->1073 2e2iB PDBj 0.0 22.8 %
:RPS:SCOP  12->1073 1i6vC  e.29.1.1 * 0.0 55.6 %
:HMM:SCOP  2->1081 1i50B_ e.29.1.1 * 0 50.2 %
:RPS:PFM   27->402 PF04563 * RNA_pol_Rpb2_1 e-115 60.4 %
:RPS:PFM   406->474 PF04565 * RNA_pol_Rpb2_3 1e-31 83.8 %
:RPS:PFM   484->551 PF10385 * RNA_pol_Rpb2_45 5e-18 68.2 %
:RPS:PFM   557->998 PF00562 * RNA_pol_Rpb2_6 e-165 74.9 %
:RPS:PFM   1000->1073 PF04560 * RNA_pol_Rpb2_7 2e-12 54.1 %
:HMM:PFM   558->998 PF00562 * RNA_pol_Rpb2_6 1.1e-169 66.9 384/386  
:HMM:PFM   26->402 PF04563 * RNA_pol_Rpb2_1 1.5e-38 40.0 165/229  
:HMM:PFM   1000->1074 PF04560 * RNA_pol_Rpb2_7 2.4e-33 69.3 75/83  
:HMM:PFM   484->551 PF10385 * RNA_pol_Rpb2_45 2.4e-31 69.7 66/66  
:HMM:PFM   406->475 PF04565 * RNA_pol_Rpb2_3 4.1e-32 63.2 68/68  
:BLT:SWISS 1->1145 RPOB_DESRM 0.0 100.0 %
:PROS 851->863|PS01166|RNA_POL_BETA
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO48756.1 GT:GENE ABO48756.1 GT:PRODUCT DNA-directed RNA polymerase, beta subunit GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 219996..223433 GB:FROM 219996 GB:TO 223433 GB:DIRECTION + GB:PRODUCT DNA-directed RNA polymerase, beta subunit GB:NOTE KEGG: chy:CHY_2318 DNA-directed RNA polymerase, beta subunit TIGRFAM: DNA-directed RNA polymerase, beta subunit PFAM: RNA polymerase Rpb2, domain 6; RNA polymerase Rpb2, domain 7; RNA polymerase Rpb2, domain 2; RNA polymerase beta subunit; RNA polymerase Rpb2, domain 3 GB:PROTEIN_ID ABO48756.1 GB:DB_XREF GI:134050785 InterPro:IPR007120 InterPro:IPR007121 InterPro:IPR007641 InterPro:IPR007642 InterPro:IPR007644 InterPro:IPR007645 InterPro:IPR010243 LENGTH 1145 SQ:AASEQ MAYPEKVGNRVRWNYGKLREVLDLPNLIEVQRNSYEWFLQEGLREVFHDISPIQDFTGNLILEFLDYTLGEPKYSVEECKERDVTYAAPLRVKVRLINKETGEVKEQEVFMGDFPLMTSKGTFIINGAERVIVSQLVRSPGVYFADQIDPSGKRLFATTMIPNRGAWLEFETDVNDHIFVRIDRTRKIPATVLIRALGYGSNALIMELFENDKFVQETLTRDNTDTEEEALVEIYKRLRPGEPPTVESARSLLNTLFFDPKRYDLAHVGRYKLQKKLKHGILYRYPNGEEGPKEWDRLLNKEVPVDREFIRELTKEDIIATFRYLLNLMQGEGIVDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMTIQDVDVITPQVLINIRPVVASIKEFFGSSQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERAGFEVRDVHHSHYGRMCPIETPEGPNIGLIGSLSTYARINSFGFMEAPYRKVDKENKRVTDEIVYLTADEEEDHIIAQANAPLDENGYFVEERVNARRGHDTLLVPTDRVEYMDVSPKQVFSVATSLIPFLEHDDANRALMGANMQRQAVPLLRCQAPVVGTGIEHRAAKDSGVCIVAERGGEVVRVTATEVAVRTDEGRTDTYKLLKFTRSNQGTCINQKPIVNKGDRVEEGQILADGPATEQGELALGRNILVAFMTWEGNNYEDAILISEKAVKEDFFTSIHIEEYECDARDTKLGPEEITRDIPNVGEDILKDLDERGIIRVGAEVRPGDILVGKVTPKGETELTAEERLLRAIFGEKAREVRDTSLRVPHGEAGKIVDVKVFSRENGDELPPGVNHLVRCYIAQKRKISEGDKMAGRHGNKGVVARILPEEDMPFMADGTPVQIVLNPLGVPSRMNIGQVLETHLGWAAKTLGFNVATPVFNGASEESIWETLRRAELPEDGKTVLYDGRTGEPFDNRVTVGYIYMIKLHHLVDDKIHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEILTVKSDDVVGRVKTYEAIVKGENVPEPGVPESFKVLIKELQSLGLDVKVLAEDEKEIEIKEIEEDITETAKELGIELPEERRVSSSKEEIEEEEEVEDNSDEFDETFLEEAEDDFSLDDED GT:EXON 1|1-1145:0| SW:ID RPOB_DESRM SW:DE RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP subunit beta; EC=2.7.7.6;AltName: Full=Transcriptase subunit beta;AltName: Full=RNA polymerase subunit beta; SW:GN Name=rpoB; OrderedLocusNames=Dred_0207; SW:KW Complete proteome; DNA-directed RNA polymerase;Nucleotidyltransferase; Transcription; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->1145|RPOB_DESRM|0.0|100.0|1145/1145| GO:SWS:NREP 4 GO:SWS GO:0003899|"GO:DNA-directed RNA polymerase activity"|DNA-directed RNA polymerase| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| PROS 851->863|PS01166|RNA_POL_BETA|PDOC00896| SEG 616->630|ggevvrvtatevavr| SEG 780->792|eteltaeerllra| SEG 1075->1096|aedekeieikeieeditetake| SEG 1103->1129|eerrvssskeeieeeeevednsdefde| BL:PDB:NREP 1 BL:PDB:REP 15->1074|1ynjC|0.0|56.3|1033/1114| RP:PDB:NREP 1 RP:PDB:REP 10->1073|2e2iB|0.0|22.8|991/1143| RP:PFM:NREP 5 RP:PFM:REP 27->402|PF04563|e-115|60.4|351/364|RNA_pol_Rpb2_1| RP:PFM:REP 406->474|PF04565|1e-31|83.8|68/69|RNA_pol_Rpb2_3| RP:PFM:REP 484->551|PF10385|5e-18|68.2|66/66|RNA_pol_Rpb2_45| RP:PFM:REP 557->998|PF00562|e-165|74.9|386/386|RNA_pol_Rpb2_6| RP:PFM:REP 1000->1073|PF04560|2e-12|54.1|74/86|RNA_pol_Rpb2_7| HM:PFM:NREP 5 HM:PFM:REP 558->998|PF00562|1.1e-169|66.9|384/386|RNA_pol_Rpb2_6| HM:PFM:REP 26->402|PF04563|1.5e-38|40.0|165/229|RNA_pol_Rpb2_1| HM:PFM:REP 1000->1074|PF04560|2.4e-33|69.3|75/83|RNA_pol_Rpb2_7| HM:PFM:REP 484->551|PF10385|2.4e-31|69.7|66/66|RNA_pol_Rpb2_45| HM:PFM:REP 406->475|PF04565|4.1e-32|63.2|68/68|RNA_pol_Rpb2_3| GO:PFM:NREP 14 GO:PFM GO:0003677|"GO:DNA binding"|PF04563|IPR007644| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04563|IPR007644| GO:PFM GO:0006350|"GO:transcription"|PF04563|IPR007644| GO:PFM GO:0003677|"GO:DNA binding"|PF04565|IPR007645| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04565|IPR007645| GO:PFM GO:0006350|"GO:transcription"|PF04565|IPR007645| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF10385|IPR019462| GO:PFM GO:0006351|"GO:transcription, DNA-dependent"|PF10385|IPR019462| GO:PFM GO:0003677|"GO:DNA binding"|PF00562|IPR007120| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF00562|IPR007120| GO:PFM GO:0006350|"GO:transcription"|PF00562|IPR007120| GO:PFM GO:0003677|"GO:DNA binding"|PF04560|IPR007641| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF04560|IPR007641| GO:PFM GO:0006350|"GO:transcription"|PF04560|IPR007641| RP:SCP:NREP 1 RP:SCP:REP 12->1073|1i6vC|0.0|55.6|1038/1113|e.29.1.1| HM:SCP:REP 2->1081|1i50B_|0|50.2|964/1207|e.29.1.1|1/1|beta and beta-prime subunits of DNA dependent RNA-polymerase| OP:NHOMO 1760 OP:NHOMOORG 1169 OP:PATTERN 11111111111111211111111222222222222222222222224222222211111111111211 1111111111111111111-11111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111--1-1111-11111111111111111111-11111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111 33233333833333233333333333333332333333333433333332232333333333333333-33333333-3333333333-35333333333333335337353534243333333342637Z3-5443322333423323232353434337G5334233-533944343e33334C56A35C3343334 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-1-- STR:NPRED 1067 STR:RPRED 93.2 SQ:SECSTR #######ccccTTHHHHHHHHHHTTcccHHHHHHHHHHHHTHHHHHHcccccccccccccEEEEEEEEEcccEccHHHHHHTTcccEEEEEEEEEcccccccccccccEEEEEEEccTTcccEEETTEEEcccEEEEEccccEEEEEccccccEEEEEEEcccccEEEEEEEEccTTcccccEEcccEEHHHHHHHTTcccTTTTGGGTcccTTcHHHHHHTTcccHHHHccccccccccccccccHHHHHHHHHHHHHTccTTTccccccHHHHHHHHcHTTTTccHHHHHHTTGTcccTTTcccccccHHHHHHHHHHHHHHHHHHHTTccccccTTcGGGEEEEcHHHHHHHHHHHHHHHHTTTcccccccccHHHHHHHHHHHHccTTccccccGGGGTcccccccccHHHHHHHHTEEEcHHHHcccccccccccccccGGGTTTcccccccccTTTTTEEEccTTcEEccccccHHHHHHHTTTEEEcTTccTTTccccEEEEEcccEEEEEccHHHHHHHHHHHHHHTcccTTcEEEEETTTTEEEEEccTTcEEEccEEEccccccccEEcccHHHHHHHHHHHHcHHHTcccEETTGGGTccEEccHHHHcccccccTTccccccccGGccccTTccHHHHHHHHHHGGGccccccTTTTTccccGTTTGGGccccccccEEEcccccTTccccEEEcHHHHHHTTTcEEEEEEEEEccccccTTcccEEcTcccccccccTTccTTccccTTcEEEcccEEEcEEcccccccccTTHHHHTTcccccccccccccEEccTTcEEEEEEEEEEEcTTccEEcTTTcEEEEEEEEEEEccccccEEEcccccEEEEEEcccTTTccEETTcccccEEEcGGGcTTTTcHHHHHHHHHHHHHHHHTccEEccccccccHHHHHHHHHHHcccTTcEEcEEcTTTcccccccEEccccccEEccccHHHHcccccccccccccccccccTTTTccccccHHHHHHHHHHTcHHHHHHTTTTccccEEcccccTTccccTccEEEEEEcHHHHHHHHHHHTTTcccccc####################################################################### DISOP:02AL 1-1,991-1000,1104-1124,1139-1139,1141-1146| PSIPRED cccccccccEEEccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccEEEEEEEEEEEcccccHHHHHHccccEEEEEEEEEEEEEccccEEEEEEEEEEcccccccccEEEEcccccEEEEEEEccccEEEEEEccccccEEEEEEEEEcccEEEEEEEccccEEEEEEcccccEEEEEEEHHHccccHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccHHHHHHHHHHHccccccEEccccccHHHHHHHHHEEccccccccEEEccccccccccHHHcEEEcccccccccEEHHHHHHHHHccccccccccccEEEEEEccccccccEEEEcccccccEEEEEcccccccccccccccEEEccccccccccHHHEEEEEccHHHHccHHHHccccccccccHHHHHHHccccccccccccccccccccHHHccccccccEEEEccccEEEEEEEEEEEEEEccccEEEEEEEcccccccccccccccccccccEEEEcEEEccccHHcccccccccEEEEEEEEccccccEEEEEEEHHHHHcccEEEEEEEEEEEEEEEccccccccccccccccHHHHcccccccEEccccEEccccEEEEEEcccccccccHHHHHHHHHHccccccEEEEEEEEcccccEEEEEEEEEEcccccccccccEEEEEEEEcccccccccHHHHcccccccEEEEEEEHHHccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHccccccccEEEEccccccEEcccEEEEHHHHHHHHHHHcccEEEEEcccccHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccccccHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHcccccHHHccccHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccc //