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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO48770.1
DDBJ      :             SSU ribosomal protein S3P
Swiss-Prot:RS3_DESRM    RecName: Full=30S ribosomal protein S3;

Homologs  Archaea  62/68 : Bacteria  910/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
d.52.3d.53.1
:221 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->207 1vs5C PDBj 2e-72 58.7 %
:RPS:PDB   1->206 3bbnC PDBj 3e-71 39.8 %
:RPS:SCOP  2->106 1fjgC1  d.52.3.1 * 2e-42 51.4 %
:RPS:SCOP  107->207 1fjgC2  d.53.1.1 * 1e-40 60.4 %
:HMM:SCOP  2->106 1fjgC1 d.52.3.1 * 3.2e-41 59.0 %
:HMM:SCOP  107->207 1fjgC2 d.53.1.1 * 2e-39 65.3 %
:RPS:PFM   1->59 PF00417 * Ribosomal_S3_N 8e-18 64.4 %
:RPS:PFM   64->116 PF07650 * KH_2 1e-07 53.2 %
:RPS:PFM   119->202 PF00189 * Ribosomal_S3_C 2e-26 70.2 %
:HMM:PFM   119->202 PF00189 * Ribosomal_S3_C 4.5e-37 65.5 84/85  
:HMM:PFM   1->61 PF00417 * Ribosomal_S3_N 6.7e-26 62.3 61/66  
:HMM:PFM   63->117 PF07650 * KH_2 3e-17 57.1 49/59  
:BLT:SWISS 1->221 RS3_DESRM e-125 100.0 %
:PROS 163->197|PS00548|RIBOSOMAL_S3

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO48770.1 GT:GENE ABO48770.1 GT:PRODUCT SSU ribosomal protein S3P GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 235292..235957 GB:FROM 235292 GB:TO 235957 GB:DIRECTION + GB:PRODUCT SSU ribosomal protein S3P GB:NOTE KEGG: chy:CHY_2303 30S ribosomal protein S3 TIGRFAM: ribosomal protein S3 PFAM: ribosomal protein S3-C-terminal domain protein; KH, type 2 domain protein; Ribosomal protein S3, N-terminal domain SMART: KH domain protein GB:PROTEIN_ID ABO48770.1 GB:DB_XREF GI:134050799 InterPro:IPR001351 InterPro:IPR004044 InterPro:IPR004087 InterPro:IPR005704 InterPro:IPR008282 LENGTH 221 SQ:AASEQ MGQKVNPKGLRVGIIKDWEGKWFADKRNYSNLLIEDVKIREYIKRKLYQAGISRIQIERAANRVKVSIHTAKPGIVIGRGGAEVEALRKELEKMTAKQVHVNIVEVKTPEVDAQLVAENIASQLEKRIAFRRAMKQTVQRSLRMGAKGIKIACSGRLAGAEIARTEWYSEGKVPLHTLRADIDYGFAEANTTYGKIGVKVWIYKGEVLPEAKKPAAGQGGE GT:EXON 1|1-221:0| SW:ID RS3_DESRM SW:DE RecName: Full=30S ribosomal protein S3; SW:GN Name=rpsC; OrderedLocusNames=Dred_0221; SW:KW Complete proteome; Ribonucleoprotein; Ribosomal protein; RNA-binding;rRNA-binding. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->221|RS3_DESRM|e-125|100.0|221/221| GO:SWS:NREP 4 GO:SWS GO:0030529|"GO:ribonucleoprotein complex"|Ribonucleoprotein| GO:SWS GO:0005840|"GO:ribosome"|Ribosomal protein| GO:SWS GO:0003723|"GO:RNA binding"|RNA-binding| GO:SWS GO:0019843|"GO:rRNA binding"|rRNA-binding| PROS 163->197|PS00548|RIBOSOMAL_S3|PDOC00474| BL:PDB:NREP 1 BL:PDB:REP 2->207|1vs5C|2e-72|58.7|206/206| RP:PDB:NREP 1 RP:PDB:REP 1->206|3bbnC|3e-71|39.8|206/217| RP:PFM:NREP 3 RP:PFM:REP 1->59|PF00417|8e-18|64.4|59/68|Ribosomal_S3_N| RP:PFM:REP 64->116|PF07650|1e-07|53.2|47/49|KH_2| RP:PFM:REP 119->202|PF00189|2e-26|70.2|84/84|Ribosomal_S3_C| HM:PFM:NREP 3 HM:PFM:REP 119->202|PF00189|4.5e-37|65.5|84/85|Ribosomal_S3_C| HM:PFM:REP 1->61|PF00417|6.7e-26|62.3|61/66|Ribosomal_S3_N| HM:PFM:REP 63->117|PF07650|3e-17|57.1|49/59|KH_2| GO:PFM:NREP 9 GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00417|IPR008282| GO:PFM GO:0005622|"GO:intracellular"|PF00417|IPR008282| GO:PFM GO:0005840|"GO:ribosome"|PF00417|IPR008282| GO:PFM GO:0006412|"GO:translation"|PF00417|IPR008282| GO:PFM GO:0003723|"GO:RNA binding"|PF07650|IPR004044| GO:PFM GO:0003735|"GO:structural constituent of ribosome"|PF00189|IPR001351| GO:PFM GO:0005622|"GO:intracellular"|PF00189|IPR001351| GO:PFM GO:0005840|"GO:ribosome"|PF00189|IPR001351| GO:PFM GO:0006412|"GO:translation"|PF00189|IPR001351| RP:SCP:NREP 2 RP:SCP:REP 2->106|1fjgC1|2e-42|51.4|105/105|d.52.3.1| RP:SCP:REP 107->207|1fjgC2|1e-40|60.4|101/101|d.53.1.1| HM:SCP:REP 2->106|1fjgC1|3.2e-41|59.0|105/0|d.52.3.1|1/1|Prokaryotic type KH domain (KH-domain type II)| HM:SCP:REP 107->207|1fjgC2|2e-39|65.3|101/101|d.53.1.1|1/1|Ribosomal protein S3 C-terminal domain| OP:NHOMO 988 OP:NHOMOORG 979 OP:PATTERN 1111-111111111111-11---111111111111111111111111111111111111111111-11 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 -----------1------------------------------------------------------------------------------------------------------------------------------------------------------------------11----------125--1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 207 STR:RPRED 93.7 SQ:SECSTR ccccccTTTccTTTTccccccccccTTccHHHHHHHHHHHcccccTTTTTcEEEEEccccccccccEEEEccTTTTccccccTTHHHHHHHHHHccccccccEEEcccTTTcHHHHHHHcTTTTTTTccHHHHHTHHHHHHHTTcccEEEEEcccccTTcccccccEEEEEcccccccTTcccccEEEccccccccEEEEEEEcccc############## DISOP:02AL 1-1,209-222| PSIPRED ccccccccEEEEEEcccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEEEEEEEccccEEEccccccHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccEEEEEEEEccccccHHEEEEEEEEEEEccccccccccEEEEEEEEcccEEEEEEEEEcccccccccccccccccc //