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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO48854.1
DDBJ      :             Integrase, catalytic region
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  62/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.55.3
:271 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   138->253 1cxuA PDBj 8e-06 22.2 %
:RPS:SCOP  138->254 1b92A  c.55.3.2 * 3e-05 23.1 %
:HMM:SCOP  3->114 1pdnC_ a.4.1.5 * 5.4e-06 23.6 %
:HMM:SCOP  134->271 1bcoA2 c.55.3.3 * 6.3e-24 34.8 %
:RPS:PFM   138->253 PF00665 * rve 4e-07 31.5 %
:HMM:PFM   136->253 PF00665 * rve 2.5e-24 36.5 115/120  
:HMM:PFM   12->62 PF01527 * Transposase_8 1.2e-05 22.7 44/76  
:BLT:SWISS 135->271 T904_LACLA 1e-10 34.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO48854.1 GT:GENE ABO48854.1 GT:PRODUCT Integrase, catalytic region GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 320773..321588 GB:FROM 320773 GB:TO 321588 GB:DIRECTION + GB:PRODUCT Integrase, catalytic region GB:NOTE PFAM: Integrase, catalytic region KEGG: dsy:DSY4578 hypothetical protein GB:PROTEIN_ID ABO48854.1 GB:DB_XREF GI:134050883 InterPro:IPR001584 LENGTH 271 SQ:AASEQ MISVSDRKKAISLIKEAVANGAREPEACKVLGITQRTLQRWRSSLTPIEDQRKNAKRPEPANKLSIDERQAIIETANQPEFKSLPPSQIVPRLADQGIYLASESTFYRVLKENNMQHHRGRAKKPCAKPISTHCATSPNQVWMWDITWLPGPAKGIFFYLYLILDLFSRKIVAWDIWTEESSENASILVRRAIMSEKRTLANEPLVLHSDNGSPMKGATLLETLYQLGITPSKSRPRVSNDNPYAESIFRTCKYRPNYPAKGFDTLTEARE GT:EXON 1|1-271:0| BL:SWS:NREP 1 BL:SWS:REP 135->271|T904_LACLA|1e-10|34.6|130/253| SEG 156->167|iffylylildlf| RP:PDB:NREP 1 RP:PDB:REP 138->253|1cxuA|8e-06|22.2|108/143| RP:PFM:NREP 1 RP:PFM:REP 138->253|PF00665|4e-07|31.5|111/116|rve| HM:PFM:NREP 2 HM:PFM:REP 136->253|PF00665|2.5e-24|36.5|115/120|rve| HM:PFM:REP 12->62|PF01527|1.2e-05|22.7|44/76|Transposase_8| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00665|IPR001584| GO:PFM GO:0015074|"GO:DNA integration"|PF00665|IPR001584| RP:SCP:NREP 1 RP:SCP:REP 138->254|1b92A|3e-05|23.1|104/144|c.55.3.2| HM:SCP:REP 3->114|1pdnC_|5.4e-06|23.6|106/0|a.4.1.5|1/1|Homeodomain-like| HM:SCP:REP 134->271|1bcoA2|6.3e-24|34.8|135/0|c.55.3.3|1/1|Ribonuclease H-like| OP:NHOMO 206 OP:NHOMOORG 62 OP:PATTERN -------------------------------------------------------------------- --------22-------11-13---311111-1-----11--1-------------------------------------------------------------------------------------13131--4--------1---------------------1-------------------------------------------------------------------------------------------------------------2-----------------------------------------------------------------------------2-1--2---------------------------------------------------------5-------------------------5------------------------------------------------------------C---------------------------------5-G---------------------------4-------2-----------1---D------16---------------------------22-4-4--------P---3-----3-----------2-----------4--------------------------------------------------------------------11121111-2----------------------------------------------------------------------------F-----E-1-11------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 136 STR:RPRED 50.2 SQ:SECSTR ######################################################################################################################################TTcTTcEEEEEEEEcGGGGGTTccEEEEEEETTTccEEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEccHHHHcHHHHHHHHHHTcEEEEEcTTcHHHHHHHHHHHHHHHHHHHHTHHHHTTccccc# DISOP:02AL 1-5,48-61,116-126,271-272| PSIPRED cccHHHHHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHcccccccccccHHHccHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHccEEEEEEEcccccHHHHHHHHHHHHHHHHccccccccEEEccccHHccHHHHHHHHHHccccEEEcccccccHHHHHHHHHHHHHHHHHccccccccHHHHHc //