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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO48894.1
DDBJ      :             transcriptional regulator
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  626/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
a.4.1c.1.26c.37.1d.110.3
:468 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   155->459 1ojlD PDBj 2e-63 44.9 %
:RPS:PDB   4->118 3bwlD PDBj 2e-08 16.1 %
:RPS:PDB   184->461 3e2tA PDBj 2e-55 14.0 %
:RPS:SCOP  4->108 1d7eA  d.110.3.1 * 7e-07 14.3 %
:RPS:SCOP  175->348 1lt7A  c.1.26.1 * 9e-53 10.1 %
:RPS:SCOP  369->462 1ntcA  a.4.1.12 * 3e-18 19.3 %
:HMM:SCOP  3->113 1nwzA_ d.110.3.1 * 4.2e-14 29.7 %
:HMM:SCOP  154->401 1ny5A2 c.37.1.20 * 5.5e-78 41.3 %
:HMM:SCOP  369->463 1etoB_ a.4.1.12 * 6.1e-17 33.7 %
:RPS:PFM   175->323 PF00158 * Sigma54_activat 1e-53 65.5 %
:RPS:PFM   420->460 PF02954 * HTH_8 2e-04 39.0 %
:HMM:PFM   155->322 PF00158 * Sigma54_activat 3.3e-73 62.9 167/168  
:HMM:PFM   421->460 PF02954 * HTH_8 1.6e-11 40.0 40/42  
:HMM:PFM   27->77 PF00989 * PAS 3.8e-05 31.4 51/113  
:BLT:SWISS 5->463 STC_CLOBE 4e-80 41.9 %
:PROS 179->192|PS00675|SIGMA54_INTERACT_1
:PROS 242->257|PS00676|SIGMA54_INTERACT_2
:PROS 369->378|PS00688|SIGMA54_INTERACT_3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO48894.1 GT:GENE ABO48894.1 GT:PRODUCT transcriptional regulator GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 362048..363454 GB:FROM 362048 GB:TO 363454 GB:DIRECTION + GB:PRODUCT transcriptional regulator GB:NOTE PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5 SMART: AAA ATPase KEGG: swo:Swol_0456 hypothetical protein GB:PROTEIN_ID ABO48894.1 GB:DB_XREF GI:134050923 InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR011704 LENGTH 468 SQ:AASEQ MNDRKRIEREFRENPVLAGVLIDNPYEGFIVVNKDGFVTFISNLYLDTINLTREDTIGKHITEVHENTKLTQVLETGKPISYDYWETKGMTLIVVRFPILNNAGDLIGAVGKAVFVDIPSGKTLANKLKQLEKEVEFYRQELYKFYNAKYTFNDMIGESDAIKKVKKIAQKIALSESTVLITGESGTGKELFAQAIHNASYRSRFPFVRINCAAVPENLLEAELFGYAEGAFTGAKKGGKPGKFELAQGGTIFLDEIGELPLSMQSKLLNVLQEREIERVGGIRTVSVDFRVIAATNRNLEDMVKEGTFRDDLYYRLNVISLKIPSLRERQDDIPLLVNYFTDKLNNKLKCSVERFTEEAMLVLSKHYWPGNIRELQNTLERVFILSDDNIISVNHLPFSIKMRKGNIIQSKRLTLDEMIDQTEKRIILDTLSNVKDDRIAAAELLGIHLSSLYRKMKKHGIKKSFTS GT:EXON 1|1-468:0| BL:SWS:NREP 1 BL:SWS:REP 5->463|STC_CLOBE|4e-80|41.9|437/632| PROS 179->192|PS00675|SIGMA54_INTERACT_1|PDOC00579| PROS 242->257|PS00676|SIGMA54_INTERACT_2|PDOC00579| PROS 369->378|PS00688|SIGMA54_INTERACT_3|PDOC00579| SEG 161->173|aikkvkkiaqkia| BL:PDB:NREP 1 BL:PDB:REP 155->459|1ojlD|2e-63|44.9|296/297| RP:PDB:NREP 2 RP:PDB:REP 4->118|3bwlD|2e-08|16.1|112/118| RP:PDB:REP 184->461|3e2tA|2e-55|14.0|258/307| RP:PFM:NREP 2 RP:PFM:REP 175->323|PF00158|1e-53|65.5|148/168|Sigma54_activat| RP:PFM:REP 420->460|PF02954|2e-04|39.0|41/42|HTH_8| HM:PFM:NREP 3 HM:PFM:REP 155->322|PF00158|3.3e-73|62.9|167/168|Sigma54_activat| HM:PFM:REP 421->460|PF02954|1.6e-11|40.0|40/42|HTH_8| HM:PFM:REP 27->77|PF00989|3.8e-05|31.4|51/113|PAS| GO:PFM:NREP 6 GO:PFM GO:0005524|"GO:ATP binding"|PF00158|IPR002078| GO:PFM GO:0005622|"GO:intracellular"|PF00158|IPR002078| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00158|IPR002078| GO:PFM GO:0008134|"GO:transcription factor binding"|PF00158|IPR002078| GO:PFM GO:0003700|"GO:transcription factor activity"|PF02954|IPR002197| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02954|IPR002197| RP:SCP:NREP 3 RP:SCP:REP 4->108|1d7eA|7e-07|14.3|105/119|d.110.3.1| RP:SCP:REP 175->348|1lt7A|9e-53|10.1|168/305|c.1.26.1| RP:SCP:REP 369->462|1ntcA|3e-18|19.3|88/91|a.4.1.12| HM:SCP:REP 3->113|1nwzA_|4.2e-14|29.7|111/0|d.110.3.1|1/1|PYP-like sensor domain (PAS domain)| HM:SCP:REP 154->401|1ny5A2|5.5e-78|41.3|247/247|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 369->463|1etoB_|6.1e-17|33.7|95/98|a.4.1.12|1/1|Homeodomain-like| OP:NHOMO 5760 OP:NHOMOORG 633 OP:PATTERN -------------------------------------------------------------------- 7LN-----------------------------------4-----------------------------1-----------1--73965999A27331--336356I5C651111111111111113337435775411-1----1-1111-----11------11--111---------------------5147777777958767778966658882692611323333O1--------------------5----1-----11------2---------------------------------------------------HI3LDCCEDCE7D7-N44511216---9-14-bX8HDA2DA497A-12-CDG444422222B8CAB444AC66933233332335-A89898974841866567766687BF54365BB9BC35722222222A332277E11111111--111111111111111----15888546538LLMKMKFCCCCJJKOFGEE9CKMLHMJG-1DFDGH877EFBCC887DAD8A9711-----454IMJCerLMOfVEdNbbe6adbcUUgLPcefhq*KV-111-111111111111111121--DCFBAABAKBBA6ECBBBEGFHFEFFBFFEII--2BGAJ------E79B966DBBEDCEFDD-BECCFDDDCCBCEDDCDDCDDD99776DBCCBDEEDEDBFBCD9986A9A94-655676655787---3-----3333A3N9K1111111111111123344326121Q9MNMNLOMMMMPMKENLJ---------68CDGEEEFEEJFGF67A88886672222--F13333331111111142--------------------------13111-1---7A2 -1------------------------------------------------------------------------------------------------------------------------------------------------------------4-----------3--2-----------1--4-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 465 STR:RPRED 99.4 SQ:SECSTR ccHcHHHHHHHHHHHHHHHHHHHHccccEEEEETTccEEEEcHHHHHHHTccGGGTTTccGGGTcHHHHHHHTccTTcEEEEEEEEcTTccEEEEccccGGGccTTGGcEEEEEEEccccccccccccEEEEcccccHHHHHHHHHHTcccGGGccccHHHHHHHHHHTHHHTHcccEEEEEcccTTTcccccHHHHcHHHHHHHHHHHHHHHccTTcccccccccHHHHHHHHHHHHcHHHHHHHHHccHHHHHTHHHHHHHHcccTTccccHHHHHHHHHHHHccEEEEccEEcHHHHHHHHHTTEEEEccccccTTcTTcccHHHHHHHTHHHHTcHHHHHHHHHHHHHHTTccHHHHHHHHHHHHTcEEEETTEEEEccHHHHTcHHHHHHHTcHHHccTTccccccTTTcccccccEEEccHHHHTTcccccccccccEEEEccHHHHHHHHHHHHGGGc### DISOP:02AL 1-2,134-152,400-415,463-469| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccEEHHHHHHHHHHcccHHHHccccHHHHHccccHHHHHHccccHHEEEEEEccEEEEEEEEEEEcccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHccccHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHHHHccccccccEEEEEcccccHHHHHHHHHcccccccccccccccccEEEEccccEEEEEEHHcccHHHHHHHHHHHHcccEEEcccccEEEEEEEEEEcccccHHHHHHcccccHHHHHHHcEEEEEccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHccccEEcHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHcccccccc //