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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO48908.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  3/68 : Bacteria  744/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:313 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->146 3fzvB PDBj 4e-11 24.3 %
:RPS:PDB   1->202 1b9nB PDBj 2e-27 11.7 %
:RPS:SCOP  1->101 1b9mA1  a.4.5.8 * 2e-20 17.8 %
:RPS:SCOP  89->304 1i69A  c.94.1.1 * 1e-25 18.8 %
:HMM:SCOP  1->112 1b9mA1 a.4.5.8 * 1.7e-22 35.2 %
:HMM:SCOP  89->302 1ixcA2 c.94.1.1 * 2.2e-24 22.1 %
:RPS:PFM   3->61 PF00126 * HTH_1 2e-07 40.7 %
:RPS:PFM   91->298 PF03466 * LysR_substrate 3e-10 25.8 %
:HMM:PFM   90->298 PF03466 * LysR_substrate 1.8e-29 22.8 197/209  
:HMM:PFM   3->62 PF00126 * HTH_1 2.8e-21 40.0 60/60  
:BLT:SWISS 3->246 RBCR_ODOSI 1e-24 28.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO48908.1 GT:GENE ABO48908.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(381358..382299) GB:FROM 381358 GB:TO 382299 GB:DIRECTION - GB:PRODUCT transcriptional regulator, LysR family GB:NOTE PFAM: regulatory protein, LysR; LysR, substrate-binding KEGG: dsy:DSY4967 hypothetical protein GB:PROTEIN_ID ABO48908.1 GB:DB_XREF GI:134050937 InterPro:IPR000847 InterPro:IPR005119 LENGTH 313 SQ:AASEQ MRLKQLQYILEVSKQKSITKAAKQLFISQPSLSSAISNLEQELNIKIFIRTHDGVEPTEIGRFLIEKASRIFQEVEEINNMCANSSVCLNGNLTVSTLPAISNHILLETLSIFKEKHPQVNISFNEDDTSNIMREIKVGNIDIGILALWDYEKEAFLFNQCKNNIHYEELFIDNFCLFTATDHILSQKQQVHIEDIQNYPLVVFKNNISDKDIEVFMKLKDINVMRFNDRESMKKVIARGNAVALLPRVMSLNDIYVQSGKIRPLTISHFKTNIHIGFVYRKDYLQIAQKKFILTLRDTVNTLLKDLPQLPAN GT:EXON 1|1-313:0| BL:SWS:NREP 1 BL:SWS:REP 3->246|RBCR_ODOSI|1e-24|28.7|237/309| BL:PDB:NREP 1 BL:PDB:REP 3->146|3fzvB|4e-11|24.3|136/284| RP:PDB:NREP 1 RP:PDB:REP 1->202|1b9nB|2e-27|11.7|188/245| RP:PFM:NREP 2 RP:PFM:REP 3->61|PF00126|2e-07|40.7|59/60|HTH_1| RP:PFM:REP 91->298|PF03466|3e-10|25.8|194/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 90->298|PF03466|1.8e-29|22.8|197/209|LysR_substrate| HM:PFM:REP 3->62|PF00126|2.8e-21|40.0|60/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->101|1b9mA1|2e-20|17.8|101/122|a.4.5.8| RP:SCP:REP 89->304|1i69A|1e-25|18.8|202/206|c.94.1.1| HM:SCP:REP 1->112|1b9mA1|1.7e-22|35.2|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 89->302|1ixcA2|2.2e-24|22.1|199/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 5459 OP:NHOMOORG 753 OP:PATTERN -----------------------1-------------1---------------1-------------- 353-611222321175411-11111911111123334DFH-623--11----331--3--212143D7453-22211212595111112221-211---118111512-4---------------1----------34422---213336445123311111133376452111111111111111----143FCCCCCCDB4CADDCAA5CAFIDBE244B442677765Na133555535544355733593453562-333BB4455344-2542344433333442222222222233233322333332223332225-64CE6666666465177722229311156921MO552312623221--41224223-----23EBE3254C24544544455459-23843F868851NEEC9ACINFEBGB25166A34343BA5555555539A43312-----------------------------125C239gUNZSVWcfYEFFGFUTkgHHHFBHiNjTZXe12ML974ACAZCS6TA9D6264285222221233346953212241128223-21353522-332224121-2--1111------------1--154D8B346B3A757777737AA88989C997F1-12449------GBFE5C9DFFBDB9BFD-FDCDEAAEDCFBECCCDCBJOJDE5AAFBECFFHFFCFDGDCFN8B9BBAB4-765656546645--161311235442398V333435333243334HHIJH9H476J4JKLKMWRWCYQTP4EEJ36323463649CDGAAAAA8FCA9877797877732221-4222------------1-------------------------------------141 -------------3------------------------------------------------------------------------------------------------------------------------------------------------7------1---------1------------5-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 300 STR:RPRED 95.8 SQ:SECSTR EcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccccccccHHEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHTTTccTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEEEcEEEEEEGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEEcTTcTTHHHHHHHHHHTccEEEEccHHHHHHHHHHTccEEEEEGGGcHHHcTTTcTTcEEEEccTTcccEEEEEEEETTcccHHHHHHHHHHcTTc############# DISOP:02AL 84-86,302-314| PSIPRED ccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEcccccccHHcccccccccEEEEEEEEccEEEEEcccccccccccccHHHHccccEEEccccccHHHHHHHHcccccEEEEEccHHHHHHHHHccccEEEEEHHHHHHHHcccccEEEEEEcccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHccccccccc //