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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49179.1
DDBJ      :             methyl-viologen-reducing hydrogenase, delta subunit
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  54/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.1.2b.34.3c.3.1d.58.1
:718 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   133->172 1jehA PDBj 3e-05 45.0 %
:BLT:PDB   511->557 1hfeL PDBj 2e-05 36.2 %
:RPS:PDB   131->400 1cl0A PDBj 3e-12 15.8 %
:RPS:PDB   511->561 1durA PDBj 9e-09 28.6 %
:RPS:SCOP  136->174 1f8rA1  c.3.1.2 * 6e-10 38.5 %
:RPS:SCOP  208->261 1d5tA1  c.3.1.3 * 1e-04 9.8 %
:RPS:SCOP  356->377 1d0xA1  b.34.3.1 * 7e-04 30.0 %
:RPS:SCOP  497->525 1e7pB1  a.1.2.1 * 4e-04 17.2 %
:RPS:SCOP  512->559 1hfeL2  d.58.1.5 * 7e-10 18.8 %
:HMM:SCOP  115->487 1sezA1 c.3.1.2 * 7.8e-31 24.3 %
:HMM:SCOP  504->647 1jnrB_ d.58.1.5 * 2.7e-17 24.8 %
:RPS:PFM   138->254 PF07992 * Pyr_redox_2 1e-08 35.8 %
:RPS:PFM   585->709 PF02662 * FlpD 4e-22 39.3 %
:HMM:PFM   585->711 PF02662 * FlpD 1.2e-43 44.4 124/124  
:HMM:PFM   138->187 PF00890 * FAD_binding_2 1.6e-11 45.8 48/421  
:HMM:PFM   511->527 PF00037 * Fer4 1.5e-07 52.9 17/24  
:HMM:PFM   538->557 PF00037 * Fer4 1.2e-06 35.0 20/24  
:HMM:PFM   345->398 PF01266 * DAO 6e-05 36.2 47/358  
:BLT:SWISS 138->249 FENR_LEUCK 6e-08 32.4 %
:BLT:SWISS 242->712 HDRA_METAC 2e-47 31.2 %
:PROS 512->523|PS00198|4FE4S_FER_1
:PROS 542->553|PS00198|4FE4S_FER_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49179.1 GT:GENE ABO49179.1 GT:PRODUCT methyl-viologen-reducing hydrogenase, delta subunit GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 686026..688182 GB:FROM 686026 GB:TO 688182 GB:DIRECTION + GB:PRODUCT methyl-viologen-reducing hydrogenase, delta subunit GB:NOTE PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; methyl-viologen-reducing hydrogenase, delta subunit; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase KEGG: sfu:Sfum_1050 methyl-viologen-reducing hydrogenase, delta subunit GB:PROTEIN_ID ABO49179.1 GB:DB_XREF GI:134051208 InterPro:IPR000103 InterPro:IPR001100 InterPro:IPR001450 InterPro:IPR003813 InterPro:IPR006076 InterPro:IPR013027 LENGTH 718 SQ:AASEQ MAKKLGFFMCTGCGIGEALDAAALTKVAAKEYKVPVCKEHGYLCSAEGVDLIKGEIEAQGLDGVIVAACSNRVNADAFNFPGVFLERVNLREQVIWSHEANDEDTQMLAEDQIRMGCEKGKVAQVPEPFIGENLSKTVLVVGGGLAGMTAALEAGKAGYPVVLVEKEATLGGWLNKVYKTTPMAAPFTSPEDPNVAARIAEIEAIPNIKVYTGATIEKIAGGPGMFDAEINQGGTIAAERVGAIVLATGAKPNVDKLDYLGYGKYPNVITQIDFEEMAKSGKIDAEKVVFVQCAGSRDAERLPYCSAACCVETLKQTMVLKELAPEAMAYVIYKDVRSSGQYEHFYKAAQETGAVFIKGEIQNITEDGGKLTVECEDILLGGNGMVDEVDLVVLANGMIPTTKATEAVGEGEAAVEAAEKILNLEYRQGPELPNLKYGFPDSHFICFPYETRRTGIYACGSVRAPMDMAKAVGDAAGAALKAIQCVEVTAGGAAVHPRSGDLSYPEFALQRCTQCKRCTEECPFGAINEDAKGNPLPNPTRCRRCGTCMGACPERIISFKNYSVGMIGNMVKAVEVPEEDEEKPRILILACENDAMPALDMAGINRLKYNSWVRIIPVRCLGSLNLVWIADSMSKGFDGVLLLGCKHGDDYQCHFMKGSELAEIRLSKVSETLDRLGLESERVRMIQINIMDYAELPKMIDKFAEDLEEFGPNPMKGF GT:EXON 1|1-718:0| BL:SWS:NREP 2 BL:SWS:REP 138->249|FENR_LEUCK|6e-08|32.4|108/339| BL:SWS:REP 242->712|HDRA_METAC|2e-47|31.2|432/793| PROS 512->523|PS00198|4FE4S_FER_1|PDOC00176| PROS 542->553|PS00198|4FE4S_FER_1|PDOC00176| SEG 18->30|aldaaaltkvaak| SEG 402->420|tkateavgegeaaveaaek| SEG 466->482|mdmakavgdaagaalka| BL:PDB:NREP 2 BL:PDB:REP 133->172|1jehA|3e-05|45.0|40/478| BL:PDB:REP 511->557|1hfeL|2e-05|36.2|47/396| RP:PDB:NREP 2 RP:PDB:REP 131->400|1cl0A|3e-12|15.8|247/316| RP:PDB:REP 511->561|1durA|9e-09|28.6|49/55| RP:PFM:NREP 2 RP:PFM:REP 138->254|PF07992|1e-08|35.8|109/275|Pyr_redox_2| RP:PFM:REP 585->709|PF02662|4e-22|39.3|122/123|FlpD| HM:PFM:NREP 5 HM:PFM:REP 585->711|PF02662|1.2e-43|44.4|124/124|FlpD| HM:PFM:REP 138->187|PF00890|1.6e-11|45.8|48/421|FAD_binding_2| HM:PFM:REP 511->527|PF00037|1.5e-07|52.9|17/24|Fer4| HM:PFM:REP 538->557|PF00037|1.2e-06|35.0|20/24|Fer4| HM:PFM:REP 345->398|PF01266|6e-05|36.2|47/358|DAO| GO:PFM:NREP 2 GO:PFM GO:0015948|"GO:methanogenesis"|PF02662|IPR003813| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02662|IPR003813| RP:SCP:NREP 5 RP:SCP:REP 136->174|1f8rA1|6e-10|38.5|39/370|c.3.1.2| RP:SCP:REP 208->261|1d5tA1|1e-04|9.8|51/336|c.3.1.3| RP:SCP:REP 356->377|1d0xA1|7e-04|30.0|20/46|b.34.3.1| RP:SCP:REP 497->525|1e7pB1|4e-04|17.2|29/133|a.1.2.1| RP:SCP:REP 512->559|1hfeL2|7e-10|18.8|48/85|d.58.1.5| HM:SCP:REP 115->487|1sezA1|7.8e-31|24.3|329/374|c.3.1.2|1/1|FAD/NAD(P)-binding domain| HM:SCP:REP 504->647|1jnrB_|2.7e-17|24.8|129/149|d.58.1.5|1/1|4Fe-4S ferredoxins| OP:NHOMO 313 OP:NHOMOORG 87 OP:PATTERN ------1111111111-------5--------4332-24422433334112224----------5--- ---1-----------------------------------------------------------------------------2-11-------2--------------------------------2442212241----------1--1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------29--A822-225--------6---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2-------------------DJ34A74454444-3642324--------6R-------------------------11------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 503 STR:RPRED 70.1 SQ:SECSTR #########################################################################################################HHHHHHHHHTcccccccTccTccccccEEEEEEEEEcccHHHHHHHHHHHTTTcccEEEccccTTcGGGGcccccccTTccccccHHHHHHHHHHHHHHTTcEEEcccccEEEcccccEEEEEEEcccccccEEEEEEEEEcccEEEcccccHHHHHHcTTTEEccHHHHGGGGTTccHHHEEEEEcccHHHHcccGGGHHHHHHHTTTccEEEEEEccccccccHHHHHHETTcTHHHHHHHTccEEEEEccEEEEEEEETTEEEEEEEEccccccccEEEEccEEEEcccEEEH###################################################################################TTTTcTTccEEEETTEEEcEEcccTTTcccccccGGGcTTccEEcccccccEEcTTTcccccHHHHHcTTccEEEccTccHHHTHHHHHHHHHHTTcccccccccccTTHHHHTTcccGGGGccHHTTcccccTTTTcHHHHHTTTcTHHHHHHHHHHTccccEEEcccGGGGGGTccc#cHHHHHHHTcccccHHHHHHHTTcTGGG########################## DISOP:02AL 1-2| PSIPRED cccEEEEEEEccccccccccHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHccccEEEEEEEccccccccccccccEEEEEEccccEEEEEcccccHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccHHHHHHHHHHHHcccEEEEEEcccccccEEEEEccccccccccccccHHHHHHHHHHHHHcccEEEEEccEEEEEEcccccEEEEEEcccEEEEEEccEEEEEccccccccccccccccccccEEEHHHHHHHHHcccccccEEEEEEEccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHHcccEEEccEEEEEEEcccEEEEEEEEccccccEEEEEccEEEEEEEEEEccccHHHHHcccccHHHcHHHccEEEEcccccccccccEEEccccccccccccccEEEccccccccHHHHHHHHHcccccccccccccccccEEEEEEcccccccEEEcccccccHHHHHHcccccEEEcccccEEEcHHHccccccHHHHcccccEEEccccHHHHHHHHHHHHccccccccccEEEEEEccccccHHHHcccccccccccEEEEEEcccccccHHHHHHHHHccccEEEEEccccccccccEEEccHHHHHHHHHHHHHHHHHccccHHEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccc //