[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49400.1
DDBJ      :             transposase, IS4 family protein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  37/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.55.3
:413 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   117->404 1b7eA PDBj 8e-21 11.1 %
:RPS:SCOP  114->404 1b7eA  c.55.3.4 * 7e-21 11.7 %
:HMM:SCOP  76->356 1musA_ c.55.3.4 * 1.4e-40 26.2 %
:RPS:PFM   145->330 PF01609 * Transposase_11 6e-13 33.5 %
:HMM:PFM   122->332 PF01609 * Transposase_11 1.6e-29 25.5 192/207  
:HMM:PFM   66->90 PF00550 * PP-binding 9.1e-05 33.3 24/67  
:BLT:SWISS 1->374 T5377_BACST 6e-26 28.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49400.1 GT:GENE ABO49400.1 GT:PRODUCT transposase, IS4 family protein GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(917200..918441) GB:FROM 917200 GB:TO 918441 GB:DIRECTION - GB:PRODUCT transposase, IS4 family protein GB:NOTE PFAM: transposase, IS4 family protein KEGG: dsy:DSY1678 hypothetical protein GB:PROTEIN_ID ABO49400.1 GB:DB_XREF GI:134051429 InterPro:IPR002559 LENGTH 413 SQ:AASEQ MDKNTNKSTYNQLFQTIYNEKFLSNVKESEVDAYAKKLTVIKLIQMISYAQLEQLKGLRHISNSLNDDNFSSAVGLDSISASQLSRKLRDLSPELTQSLFSDIVHQFGTEIGFKSIRQELGRIYLIDSSTISLCLSRYRWAEFRKTKSGVKLHLRIQLLEQGVLPDKAIIKPAKSADKTQMDALVVEKDALNVFDRGYLDYKRFDNYSNNGTRFVSRLKSNAIVETLEEFPTNQDSLIKKDHKVILGKDGTTKMQNPLRLIETEDTEGKPVIIITNDFELSAEEISDIYRYRWQIELFFKWIKQHFCVKHFYGLSQQAVENQLMIALITYCLMMLLKKKTGYEGPLLKIQMLLHTCLYVDFTKFVRKLHHKSGQSSRGRRCIDHEKVYNITLVQVLQGEAEHLDDLTYDPIIA GT:EXON 1|1-413:0| BL:SWS:NREP 1 BL:SWS:REP 1->374|T5377_BACST|6e-26|28.2|344/377| RP:PDB:NREP 1 RP:PDB:REP 117->404|1b7eA|8e-21|11.1|288/372| RP:PFM:NREP 1 RP:PFM:REP 145->330|PF01609|6e-13|33.5|170/192|Transposase_11| HM:PFM:NREP 2 HM:PFM:REP 122->332|PF01609|1.6e-29|25.5|192/207|Transposase_11| HM:PFM:REP 66->90|PF00550|9.1e-05|33.3|24/67|PP-binding| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF01609|IPR002559| GO:PFM GO:0004803|"GO:transposase activity"|PF01609|IPR002559| GO:PFM GO:0006313|"GO:transposition, DNA-mediated"|PF01609|IPR002559| RP:SCP:NREP 1 RP:SCP:REP 114->404|1b7eA|7e-21|11.7|291/372|c.55.3.4| HM:SCP:REP 76->356|1musA_|1.4e-40|26.2|271/0|c.55.3.4|1/1|Ribonuclease H-like| OP:NHOMO 185 OP:NHOMOORG 39 OP:PATTERN -------------------------54----------------------------------------- ------------------------------------------------------------------------------------------31--A----------9-----------------------31--1----------------4-------------A17-------------------------2---------1-------3--------3----------------------------------------------------------------------------------------------------------------------------------------E8-7---------------4--------------------------------------------------1-3--4-9---------------------------------------------------------------------------------------------------------------11-----------------------1-4-------1-------75A5A17-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------------------------D------------------------------------------------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 288 STR:RPRED 69.7 SQ:SECSTR ####################################################################################################################TTcccEEEEEEEEEcccccEEEEEEEEETTTcEEEEEEEEcccccGGGHHHHHTHHHHHHHHHHHHHGGGGGGEEEEEEEcccHHHHHHHHHHHTcEEEEEEccccccTTTcccHHHHHHTccccEEEEEEEccccccccEEEcccccccccEEEEEEccccHHHHHHHHHHHHTcTHHHHHHHHHHHHHTTTcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcHHHHHHHTTcccTTTccHHHHHHHHHHTccccccccTTcHHHHHHHHHHHHcccc######### DISOP:02AL 1-2,113-113,370-383| PSIPRED ccccccccHHHHHHHHccHHHHHHHHHHHccEEccccccHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcEEEEccHHHcccccccccccccEEEEEEEEccccccccEEEEEcccccHHHHHHHcccccccEEEEEcccccHHHHHHHHHccccEEEEcccccEEEEHHHcccccccEEEEEEEEEEEEccccccEEEEEEEEEEcccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccc //