[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49515.1
DDBJ      :             single-strand binding protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  865/915 : Eukaryota  7/199 : Viruses  19/175   --->[See Alignment]
b.40.4
:136 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->96 1eygD PDBj 3e-16 38.9 %
:RPS:PDB   1->117 2cczA PDBj 2e-29 15.0 %
:RPS:SCOP  2->108 1ue1A  b.40.4.3 * 1e-28 31.1 %
:HMM:SCOP  1->136 1se8A_ b.40.4.3 * 1.7e-46 48.5 %
:RPS:PFM   2->103 PF00436 * SSB 1e-23 54.9 %
:HMM:PFM   2->103 PF00436 * SSB 3.4e-37 58.4 101/104  
:BLT:SWISS 1->104 SSB_BACHD 3e-32 60.6 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49515.1 GT:GENE ABO49515.1 GT:PRODUCT single-strand binding protein GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 1037881..1038291 GB:FROM 1037881 GB:TO 1038291 GB:DIRECTION + GB:PRODUCT single-strand binding protein GB:NOTE TIGRFAM: single-strand binding protein PFAM: single-strand binding protein/Primosomal replication protein n KEGG: mta:Moth_0129 single-strand binding protein GB:PROTEIN_ID ABO49515.1 GB:DB_XREF GI:134051544 InterPro:IPR000424 InterPro:IPR010913 InterPro:IPR011344 LENGTH 136 SQ:AASEQ MLNKVILIGRLTRDPELRYTTNGIAVAKLNLAVERPQFNREREKETDFIDIVVWQRLAEICANNLGKGRLVAVDGRLQVRSYDDNQGIRRKAAEVVAENVKFLDWPKDRPNHQDSDNNKGDGFGSEISFNGDDIPF GT:EXON 1|1-136:0| BL:SWS:NREP 1 BL:SWS:REP 1->104|SSB_BACHD|3e-32|60.6|104/168| BL:PDB:NREP 1 BL:PDB:REP 2->96|1eygD|3e-16|38.9|95/112| RP:PDB:NREP 1 RP:PDB:REP 1->117|2cczA|2e-29|15.0|113/121| RP:PFM:NREP 1 RP:PFM:REP 2->103|PF00436|1e-23|54.9|102/104|SSB| HM:PFM:NREP 1 HM:PFM:REP 2->103|PF00436|3.4e-37|58.4|101/104|SSB| GO:PFM:NREP 1 GO:PFM GO:0003697|"GO:single-stranded DNA binding"|PF00436|IPR000424| RP:SCP:NREP 1 RP:SCP:REP 2->108|1ue1A|1e-28|31.1|106/113|b.40.4.3| HM:SCP:REP 1->136|1se8A_|1.7e-46|48.5|136/0|b.40.4.3|1/1|Nucleic acid-binding proteins| OP:NHOMO 1256 OP:NHOMOORG 891 OP:PATTERN -------------------------------------------------------------------- 111212211121211-111-1111-111111--1111111222211111111222111111111112111111111212221111111121212111---1224211121---------------222222222223333311131212122-111111111-1112221111111111111111-1111121222222222222222221331221222331114223321153222222134432222221611122121112111331111114334223232222222223232321433233322233222222222212232121224353222332232222241121121131111111121111-11111112415111122121111111111111112-1111111131111111111111111-11111112111311111111111111211---11111111111111111111111111-2231111112211111111112211111111131112211331121211211121111111-2111111111111112-111111211111111212113111112111121111211111111111111111331111111111111111111211111111111-2111111111111111111221121221-2112242111221221221311111222111211121222213311111111111111111111111-11111111111111-11112123112222111111111111111111111111211121111111111111111111111111111111111-4324111-2211111111111111151221-1-121-----111-11111111-111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------1----2---------11---------1---1-----1---- -----------------------------1-----------1---1--------------1-----------------1---11----------1----------1-111------------1----11-----111----------------1--------------------- STR:NPRED 117 STR:RPRED 86.0 SQ:SECSTR ccccEEEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEccTTHHHHHTccTTcEEEEEEcEEcccccccccccEEEEEEEccEEEEcccHHHHHHHHHccc################### DISOP:02AL 101-131| PSIPRED ccEEEEEEEEEccccEEEEcccccEEEEEEEEEccccccccccccccEEEEEEEcHHHHHHHHHcccccEEEEEEEEEEEEEEcccccEEEEEEEEEEEEEEcccccccccccccccccccccccccccccccccc //