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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49604.1
DDBJ      :             NusB antitermination factor
Swiss-Prot:NUSB_DESRM   RecName: Full=N utilization substance protein B homolog;         Short=Protein nusB;

Homologs  Archaea  0/68 : Bacteria  646/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.79.1
:143 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->128 1tzwA PDBj 2e-19 33.3 %
:RPS:PDB   3->128 3d3cA PDBj 2e-32 30.4 %
:RPS:SCOP  2->129 1eyvA  a.79.1.1 * 7e-31 32.8 %
:HMM:SCOP  2->129 1eyvA_ a.79.1.1 * 7.9e-39 45.3 %
:RPS:PFM   6->128 PF01029 * NusB 3e-20 43.6 %
:HMM:PFM   4->129 PF01029 * NusB 1.1e-41 42.4 125/134  
:BLT:SWISS 1->143 NUSB_DESRM 1e-77 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49604.1 GT:GENE ABO49604.1 GT:PRODUCT NusB antitermination factor GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 1140804..1141235 GB:FROM 1140804 GB:TO 1141235 GB:DIRECTION + GB:PRODUCT NusB antitermination factor GB:NOTE TIGRFAM: transcription antitermination factor NusB PFAM: NusB/RsmB/TIM44 KEGG: dsy:DSY2364 hypothetical protein GB:PROTEIN_ID ABO49604.1 GB:DB_XREF GI:134051633 InterPro:IPR006027 InterPro:IPR011605 LENGTH 143 SQ:AASEQ MGRRQARETALQVLFQIDLGKTEPDLALNNTAEEFGAGPQEIEFARQLVMGTLEHIEEIDAMIGKVSKEWQLNRMANVDRNIMRLAIFEMNYRADIPKSVSVNEALELSKIFGTPDSVRFINGILGKLLDNKDEAAPVISSLE GT:EXON 1|1-143:0| SW:ID NUSB_DESRM SW:DE RecName: Full=N utilization substance protein B homolog; Short=Protein nusB; SW:GN Name=nusB; OrderedLocusNames=Dred_1069; SW:KW Complete proteome; Transcription; Transcription regulation;Transcription termination. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->143|NUSB_DESRM|1e-77|100.0|143/143| GO:SWS:NREP 3 GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| GO:SWS GO:0006353|"GO:transcription termination"|Transcription termination| BL:PDB:NREP 1 BL:PDB:REP 3->128|1tzwA|2e-19|33.3|126/142| RP:PDB:NREP 1 RP:PDB:REP 3->128|3d3cA|2e-32|30.4|125/138| RP:PFM:NREP 1 RP:PFM:REP 6->128|PF01029|3e-20|43.6|117/124|NusB| HM:PFM:NREP 1 HM:PFM:REP 4->129|PF01029|1.1e-41|42.4|125/134|NusB| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF01029|IPR006027| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01029|IPR006027| RP:SCP:NREP 1 RP:SCP:REP 2->129|1eyvA|7e-31|32.8|128/131|a.79.1.1| HM:SCP:REP 2->129|1eyvA_|7.9e-39|45.3|128/131|a.79.1.1|1/1|NusB-like| OP:NHOMO 662 OP:NHOMOORG 646 OP:PATTERN -------------------------------------------------------------------- 11111-1-111111-1111-1-111-111111-11111--11111-111111111111--11111111111-1111111111-1-1--111111111--1---1111111----------111-121211111121111111111112111121111-------11-1111------------111--11111111111111111111111111111111111111111111111111111111111111111111----11111111--111111111111111111111111111111-11--11-1111-1-1111111-12211111111111121111111111-12121211222121111111----11-11-111-11-1-----1-11111111111111--------11---1---11111111-----------------------------------------------------------------------1111111111111111-1111111-----1---1--11--1-1-11-111111111111111-1--111111111111111111111111111111111---111111111111111111111--1111111111111111111111111111111----1111-11111111111111111-11-1111111111111111111111111111111111111111111111111111-11111111111111111111111-1-1--1111111111111111-----------1----1111111111111---------111111111111-1111--------------111111111111111111--------------------------1111111111111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 138 STR:RPRED 96.5 SQ:SECSTR #THHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccTTccHHHHHHHHHHHHTcHHHHHHHHGGGTTTcccccccHHHHHHHHHHHHHHHHcTTccHHHHHHHHHHHHHHHccTTHHHHHHHHHHHHTTccccTTTcc#### DISOP:02AL 1-2,141-141,143-144| PSIPRED ccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHcc //