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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49640.1
DDBJ      :             RNA polymerase, sigma 28 subunit, FliA/WhiG family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  907/915 : Eukaryota  23/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:260 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   20->252 3dxjF PDBj 3e-22 32.5 %
:RPS:PDB   13->259 3dxjF PDBj 5e-29 24.5 %
:RPS:SCOP  11->106 1sigA  a.177.1.1 * 5e-24 35.4 %
:RPS:SCOP  107->163 1l0oC  a.4.13.2 * 2e-14 49.1 %
:RPS:SCOP  201->255 1ku3A  a.4.13.2 * 3e-09 30.9 %
:HMM:SCOP  13->110 1ku2A2 a.177.1.1 * 1.6e-32 48.0 %
:HMM:SCOP  112->188 1rp3A1 a.4.13.1 * 1.9e-18 44.0 %
:HMM:SCOP  171->257 1iw7F2 a.4.13.2 * 1.8e-15 34.5 %
:RPS:PFM   40->102 PF04542 * Sigma70_r2 4e-07 41.3 %
:RPS:PFM   122->175 PF04539 * Sigma70_r3 6e-06 48.1 %
:RPS:PFM   205->252 PF04545 * Sigma70_r4 5e-05 45.8 %
:HMM:PFM   206->253 PF04545 * Sigma70_r4 2.2e-18 45.8 48/50  
:HMM:PFM   40->107 PF04542 * Sigma70_r2 1e-19 35.3 68/71  
:HMM:PFM   118->184 PF04539 * Sigma70_r3 2.6e-15 40.3 67/78  
:BLT:SWISS 15->258 RPSF_BACME 9e-77 56.2 %
:PROS 64->77|PS00715|SIGMA70_1
:PROS 225->251|PS00716|SIGMA70_2

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49640.1 GT:GENE ABO49640.1 GT:PRODUCT RNA polymerase, sigma 28 subunit, FliA/WhiG family GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 1175813..1176595 GB:FROM 1175813 GB:TO 1176595 GB:DIRECTION + GB:PRODUCT RNA polymerase, sigma 28 subunit, FliA/WhiG family GB:NOTE PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 KEGG: mta:Moth_1496 sigma 28 (flagella/sporulation) GB:PROTEIN_ID ABO49640.1 GB:DB_XREF GI:134051669 InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013249 LENGTH 260 SQ:AASEQ MSSSRLLEMNLPRFPLLGDKEMRGLLKKAQSGNSEARERLVNCNLKLVFNLVQRFSNRGYELEDLFQIGCIGLMKAIDKFDLSYDVKFSTYAVPMIVGEIRRFLRDDSPVKVSRSLKETAYKIQQTRDRLTARLGREPSINEIAEELSYSREEVVNALEAAQMPTSIYETLHQDDGDPIYILDQLSGEDEGDAPWLEKLAVKQILIQLPERDRQILLWRFFEDKTQSEVALRLGLSQVQVSRLERQALRKLKELMHQTGS GT:EXON 1|1-260:0| BL:SWS:NREP 1 BL:SWS:REP 15->258|RPSF_BACME|9e-77|56.2|242/253| PROS 64->77|PS00715|SIGMA70_1|PDOC00592| PROS 225->251|PS00716|SIGMA70_2|PDOC00592| BL:PDB:NREP 1 BL:PDB:REP 20->252|3dxjF|3e-22|32.5|231/349| RP:PDB:NREP 1 RP:PDB:REP 13->259|3dxjF|5e-29|24.5|245/349| RP:PFM:NREP 3 RP:PFM:REP 40->102|PF04542|4e-07|41.3|63/70|Sigma70_r2| RP:PFM:REP 122->175|PF04539|6e-06|48.1|54/78|Sigma70_r3| RP:PFM:REP 205->252|PF04545|5e-05|45.8|48/49|Sigma70_r4| HM:PFM:NREP 3 HM:PFM:REP 206->253|PF04545|2.2e-18|45.8|48/50|Sigma70_r4| HM:PFM:REP 40->107|PF04542|1e-19|35.3|68/71|Sigma70_r2| HM:PFM:REP 118->184|PF04539|2.6e-15|40.3|67/78|Sigma70_r3| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF04539|IPR007624| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04539|IPR007624| GO:PFM GO:0006352|"GO:transcription initiation"|PF04539|IPR007624| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04539|IPR007624| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04539|IPR007624| GO:PFM GO:0003677|"GO:DNA binding"|PF04545|IPR007630| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04545|IPR007630| GO:PFM GO:0006352|"GO:transcription initiation"|PF04545|IPR007630| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04545|IPR007630| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04545|IPR007630| RP:SCP:NREP 3 RP:SCP:REP 11->106|1sigA|5e-24|35.4|96/305|a.177.1.1| RP:SCP:REP 107->163|1l0oC|2e-14|49.1|57/57|a.4.13.2| RP:SCP:REP 201->255|1ku3A|3e-09|30.9|55/61|a.4.13.2| HM:SCP:REP 13->110|1ku2A2|1.6e-32|48.0|98/0|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 112->188|1rp3A1|1.9e-18|44.0|75/0|a.4.13.1|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 171->257|1iw7F2|1.8e-15|34.5|87/105|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2942 OP:NHOMOORG 930 OP:PATTERN -------------------------------------------------------------------- 2134822222222234433-36223333333345557465433451123333232111114472765DDC61111111211282254511111111111111112211242222222222222211-1111111115555611155U8A7776568866677866579AB757555557555532-1122256777777667666667677777666667777332222229722222222222222222222111211211111111111111111111111111111111111111111111111111111111111111169686665777667668666555777326657566667767656676212435222332222222221132123122222222222-22323223322132233323332212222223444423222222222122211431122111122222212221222222222221322322122666686344545545444536666565511333233223224325444333232222222333344332243332333332445544444555554341111111111111111111121111553434544333355444545444544545542-2644422222243444444443444444-44445343444453443343334444434444444444444444424324432454555454554223233333444422444222222222221222222222222243444444444444434442222222223555544444544442222222222222222342222222222222242111111-11111111111111-11112131112111241 -------1----------------------------------------------------------------------------------------------------2-------------------------------------------------1----------------3111B122226589-64541---4 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 247 STR:RPRED 95.0 SQ:SECSTR ############HHHHHTccHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTcHccccccccHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHHTTTcc# DISOP:02AL 1-2,253-253,256-261| PSIPRED ccHHHHHHHHHcccccccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHccccccccccccccccHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccc //