Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49676.1
DDBJ : ribosomal large subunit pseudouridine synthase B
Swiss-Prot:
Homologs Archaea 0/68 : Bacteria 868/915 : Eukaryota 34/199 : Viruses 0/175 --->[See Alignment]
d.265.1
d.66.1
:309 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB 4->238 3dh3C PDBj 8e-36 40.3 %
:RPS:PDB 3->238 3dh3B PDBj 2e-46 34.8 %
:RPS:SCOP 4->58 1vioA2 d.66.1.5 * 5e-13 25.9 %
:RPS:SCOP 64->234 1kskA4 d.265.1.3 * 2e-39 34.5 %
:HMM:SCOP 4->104 1c06A_ d.66.1.2 * 6.1e-25 40.4 %
:HMM:SCOP 61->235 1vioA1 d.265.1.3 * 4.6e-47 41.9 %
:RPS:PFM 4->45 PF01479 * S4 2e-04 50.0 %
:RPS:PFM 66->192 PF00849 * PseudoU_synth_2 1e-15 46.5 %
:HMM:PFM 65->197 PF00849 * PseudoU_synth_2 4.7e-29 31.1 132/164
:HMM:PFM 3->45 PF01479 * S4 9.4e-14 46.5 43/48
:BLT:SWISS 1->241 Y1464_AQUAE 3e-61 48.8 %
:PROS 102->116|PS01149|PSI_RSU
:SEG
SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49676.1
GT:GENE ABO49676.1
GT:PRODUCT ribosomal large subunit pseudouridine synthase B
GT:DATABASE GIB00494CH01
GT:ORG dred0
GB:ACCESSION GIB00494CH01
GB:LOCATION 1214415..1215344
GB:FROM 1214415
GB:TO 1215344
GB:DIRECTION +
GB:PRODUCT ribosomal large subunit pseudouridine synthase B
GB:NOTE PFAM: RNA-binding S4 domain protein; pseudouridine synthase KEGG: gsu:GSU1403 ribosomal large subunit pseudouridine synthase B
GB:PROTEIN_ID ABO49676.1
GB:DB_XREF GI:134051705 InterPro:IPR000748 InterPro:IPR002942 InterPro:IPR006145
LENGTH 309
SQ:AASEQ MEERLQKILAKAGVASRRHSEELIISGQVKVNGKTVTEMGLKVDPTKDKIEVKGKPLPPLEKKVYLLMNKPRGYVTTLSDERDRKTVVDLLKGVEQRVYPVGRLDYDSEGLLLLTNDGELTQALTHPKHKVKKTYLAKVDGIPETEELKAMAKGLVLEDGPTAPADVRLAGTGDNRALLEISIHEGRNRQVRRMCEHIGYKVLRLRRTRIGTLELGSLKSGEVRALTKKELRELASLVGLKQNYNDMQLTTEVQKKKPSPCGRVGRIKGKVSEQKSNRSAKSKVNEFFEKGTLRGKNSKSKVSSRESSR
GT:EXON 1|1-309:0|
BL:SWS:NREP 1
BL:SWS:REP 1->241|Y1464_AQUAE|3e-61|48.8|240/249|
PROS 102->116|PS01149|PSI_RSU|PDOC00885|
SEG 298->308|skskvssress|
BL:PDB:NREP 1
BL:PDB:REP 4->238|3dh3C|8e-36|40.3|226/239|
RP:PDB:NREP 1
RP:PDB:REP 3->238|3dh3B|2e-46|34.8|230/241|
RP:PFM:NREP 2
RP:PFM:REP 4->45|PF01479|2e-04|50.0|42/46|S4|
RP:PFM:REP 66->192|PF00849|1e-15|46.5|127/149|PseudoU_synth_2|
HM:PFM:NREP 2
HM:PFM:REP 65->197|PF00849|4.7e-29|31.1|132/164|PseudoU_synth_2|
HM:PFM:REP 3->45|PF01479|9.4e-14|46.5|43/48|S4|
GO:PFM:NREP 5
GO:PFM GO:0003723|"GO:RNA binding"|PF01479|IPR002942|
GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145|
GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145|
GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145|
GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145|
RP:SCP:NREP 2
RP:SCP:REP 4->58|1vioA2|5e-13|25.9|54/58|d.66.1.5|
RP:SCP:REP 64->234|1kskA4|2e-39|34.5|168/172|d.265.1.3|
HM:SCP:REP 4->104|1c06A_|6.1e-25|40.4|99/159|d.66.1.2|1/1|Alpha-L RNA-binding motif|
HM:SCP:REP 61->235|1vioA1|4.6e-47|41.9|172/0|d.265.1.3|1/1|Pseudouridine synthase|
OP:NHOMO 2102
OP:NHOMOORG 902
OP:PATTERN -------------------------------------------------------------------- 1221111111111111111-11111111111111111111111111111111111111--11111111111-1111111111121222111112-11--21333143412-1111111-11111111111111111122111111122222222222222222222222221211111211111112222-222-4444444344444422222244422232332222223332222222222222222222-21222212222211223232213333333333322333333333333333333333333333333333323324222222242422223344232222221111121111222322-22211333311111121111111111111111111111-3322222212112111222222221144122111112221111111111111322------------1111111111111-----1212-2222243333444444444444444444444443333334444432242553454454334333323243421113111111111111111121111113111221212222211111111112111233442355624545666567755556-77577--2111211111143333444444444444-4444444444444444444444333344444444444444444544434442-433343333444--2211111222224234333333333333323333333344333444433343144444441111111113544644444445445456666565122211122211111111111121311111-21111--11111--12---2212221112123 21--22--411-------------------------------------------------------------------------------------------------C2-----------------------------------------------------3---------1-1125D433111111-114432222 -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
STR:NPRED 238
STR:RPRED 77.0
SQ:SECSTR HHEEHHHHHHTTTcccHHHHHHHHHTTcEEETTEEccTTcEEcccccEEETTEEEccccGGGccEEEEEEcTTcccccccccTTcHHHHHTcccEcccEEccccccccEEEEEEEccTHHHHHHHcGGGcccEEEEEEEcccccHHHHHHHHTccccccccccccEEEEEEEEccccEEEEEEccccTTHHHHHHHHTTccEEEEEEEEETTEEcTTccTTcEEEccHHHHHHHHHTc#######################################################################
DISOP:02AL 1-1,238-310|
PSIPRED cHHHHHHHHHHcccccHHHHHHHHHcccEEEccEEEccccEEEcccccEEEEEccccccccccEEEEEEccccEEEEccccccccHHHHHHHHccccEEEcccccccccEEEEEEccHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHccccccccccccEEEEEEEccccEEEEEEEEccccHHHHHHHHHHcccEEEEEEEEEEccEEccccccccEEEccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
//
[GTOP]
