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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49688.1
DDBJ      :             hydroxymethylbutenyl pyrophosphate reductase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  885/915 : Eukaryota  122/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.47.1c.92.1
:672 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->276 3dnfB PDBj 5e-68 49.5 %
:BLT:PDB   291->363 2z0sA PDBj 3e-05 33.8 %
:BLT:PDB   463->539 2oceA PDBj 2e-14 44.2 %
:BLT:PDB   555->626 1sroA PDBj 2e-10 43.7 %
:RPS:PDB   1->276 3dnfA PDBj 2e-43 43.6 %
:RPS:PDB   291->573 2ahoB PDBj 4e-30 11.2 %
:RPS:PDB   556->625 1ah9A PDBj 7e-06 19.7 %
:RPS:SCOP  56->143 1hrkA  c.92.1.1 * 3e-04 11.5 %
:RPS:SCOP  165->295 1qgvA  c.47.1.8 * 4e-04 11.2 %
:RPS:SCOP  295->373 2ba0A1  b.40.4.5 * 4e-12 23.8 %
:RPS:SCOP  383->463 1go3E1  b.40.4.5 * 5e-08 18.3 %
:RPS:SCOP  469->556 1go3E1  b.40.4.5 * 5e-22 26.1 %
:RPS:SCOP  552->626 1sroA  b.40.4.5 * 5e-12 41.3 %
:HMM:SCOP  265->393 1wi5A_ b.40.4.5 * 4.1e-25 34.2 %
:HMM:SCOP  371->451 1q46A2 b.40.4.5 * 1.6e-18 32.1 %
:HMM:SCOP  468->552 1go3E1 b.40.4.5 * 2.9e-30 50.6 %
:HMM:SCOP  534->651 1wi5A_ b.40.4.5 * 4.6e-30 41.9 %
:RPS:PFM   3->273 PF02401 * LYTB 5e-59 43.9 %
:RPS:PFM   468->536 PF00575 * S1 5e-14 56.5 %
:RPS:PFM   555->623 PF00575 * S1 1e-08 42.0 %
:HMM:PFM   3->275 PF02401 * LYTB 1.5e-89 43.2 273/281  
:HMM:PFM   295->366 PF00575 * S1 4.1e-14 40.3 72/74  
:HMM:PFM   384->450 PF00575 * S1 7.5e-14 35.8 67/74  
:HMM:PFM   468->539 PF00575 * S1 1.8e-28 52.8 72/74  
:HMM:PFM   553->625 PF00575 * S1 6.9e-25 43.8 73/74  
:BLT:SWISS 2->627 ISPH_CLOAB e-143 43.8 %
:REPEAT 3|347->422|430->510|519->596
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49688.1 GT:GENE ABO49688.1 GT:PRODUCT hydroxymethylbutenyl pyrophosphate reductase GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 1224655..1226673 GB:FROM 1224655 GB:TO 1226673 GB:DIRECTION + GB:PRODUCT hydroxymethylbutenyl pyrophosphate reductase GB:NOTE TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase PFAM: RNA binding S1 domain protein; LytB protein KEGG: dsy:DSY2255 hypothetical protein GB:PROTEIN_ID ABO49688.1 GB:DB_XREF GI:134051717 InterPro:IPR000110 InterPro:IPR003029 InterPro:IPR003451 LENGTH 672 SQ:AASEQ MRIKLASKAGFCYGVKRAIDLALSTAKEKAGNIYTLGPLIHNPQVVQNLAENGICEINDIGEVKEGTVIIRSHGVGPEIIQAAREKGLKVLDATCPFVARAQKYAHEMAAQGIPVYILGDPGHPEVQGILGWTEGKGSVIDNPSEITRVEHPKVGVVAQTTQPLSNFQALLEALQNQGVEVDARNTICHATGERQRAAMELAREVDVMVVVGGKNSANTKKLAKICQETGTPTYHVESARELRKEWFLGHEIVGLTAGASTPDAIIEEVKKRMNEMDQMTNGEEGMSEAMEVKSPQAGELVKGIVVQVGMDEVLVDIRAKSEGVIPRKEMAFYGVDNLQEIVKVGDEIECVVIKAEDNEGKIILSKERADAEKAWDGLEEAMEQGTIIKGVVREVVKGGMLVDVGVRAFLPASLVERGYVEDLSKYLNQEFEVRVIEMNKQRKKVVVSRKAVLEEQNARKREELLASLQEGQIVKGIVRRITNFGAFVDLGGLDGLLHISEMSWHRINHPQEVVKVGDELEVMVLKVDTQNEKISLGLKQVLPNPWDNVEEKYPVGNIFNAKVVRLAPFGAFVQLEPGVEGLVHISHLADRHVEKPEDVVKEGEEVQVKVLSMDPSEKRVRLSIREVNGERRSAREARPRKQEEVQEQNVMNETPEEKITLGDVFGDMFKEK GT:EXON 1|1-672:0| BL:SWS:NREP 1 BL:SWS:REP 2->627|ISPH_CLOAB|e-143|43.8|623/642| NREPEAT 1 REPEAT 3|347->422|430->510|519->596| SEG 597->610|edvvkegeevqvkv| SEG 642->653|qeevqeqnvmne| BL:PDB:NREP 4 BL:PDB:REP 3->276|3dnfB|5e-68|49.5|273/282| BL:PDB:REP 291->363|2z0sA|3e-05|33.8|71/175| BL:PDB:REP 463->539|2oceA|2e-14|44.2|77/729| BL:PDB:REP 555->626|1sroA|2e-10|43.7|71/76| RP:PDB:NREP 3 RP:PDB:REP 1->276|3dnfA|2e-43|43.6|275/281| RP:PDB:REP 291->573|2ahoB|4e-30|11.2|251/259| RP:PDB:REP 556->625|1ah9A|7e-06|19.7|66/71| RP:PFM:NREP 3 RP:PFM:REP 3->273|PF02401|5e-59|43.9|271/280|LYTB| RP:PFM:REP 468->536|PF00575|5e-14|56.5|69/74|S1| RP:PFM:REP 555->623|PF00575|1e-08|42.0|69/74|S1| HM:PFM:NREP 5 HM:PFM:REP 3->275|PF02401|1.5e-89|43.2|273/281|LYTB| HM:PFM:REP 295->366|PF00575|4.1e-14|40.3|72/74|S1| HM:PFM:REP 384->450|PF00575|7.5e-14|35.8|67/74|S1| HM:PFM:REP 468->539|PF00575|1.8e-28|52.8|72/74|S1| HM:PFM:REP 553->625|PF00575|6.9e-25|43.8|73/74|S1| GO:PFM:NREP 4 GO:PFM GO:0019288|"GO:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway"|PF02401|IPR003451| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02401|IPR003451| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 6 RP:SCP:REP 56->143|1hrkA|3e-04|11.5|87/359|c.92.1.1| RP:SCP:REP 165->295|1qgvA|4e-04|11.2|116/130|c.47.1.8| RP:SCP:REP 295->373|2ba0A1|4e-12|23.8|78/83|b.40.4.5| RP:SCP:REP 383->463|1go3E1|5e-08|18.3|81/99|b.40.4.5| RP:SCP:REP 469->556|1go3E1|5e-22|26.1|88/99|b.40.4.5| RP:SCP:REP 552->626|1sroA|5e-12|41.3|74/76|b.40.4.5| HM:SCP:REP 265->393|1wi5A_|4.1e-25|34.2|117/0|b.40.4.5|1/4|Nucleic acid-binding proteins| HM:SCP:REP 371->451|1q46A2|1.6e-18|32.1|81/0|b.40.4.5|2/4|Nucleic acid-binding proteins| HM:SCP:REP 468->552|1go3E1|2.9e-30|50.6|85/0|b.40.4.5|3/4|Nucleic acid-binding proteins| HM:SCP:REP 534->651|1wi5A_|4.6e-30|41.9|117/0|b.40.4.5|4/4|Nucleic acid-binding proteins| OP:NHOMO 2552 OP:NHOMOORG 1009 OP:PATTERN ---------------------------------1--------1------------------------- 3342222222221222233-322232333332222222222344222222221222222222223223232222222222222322224443232221112111133423222222222222223222222222325554422143333433333333333333322334333333333333322222223235333332333333333445545334334425323344323422222222222222243312111121211111111131121-3222222222322333333333322222222222222311333111224435444445455523554333343333232123323233124433211334222222222224333333433422222222222-322223222221222222222222223433233333334222222222222233222222222221111111111111-1222233322233333333333333333344333323334444422333343333332333323322222222222322332223543433343342555344535333334323222222222222222222243233223344433444322222323222232332232-1433222122233344333333333333-333333333333333333334343434333333333333333333333333423333333333332234222221222224333332322332323343333333223434454333333333423322222222213332444443333333333333333444223333444411111111332------------------1------1221122122222 23------2---11111-1111111111111111111------11111111111111111111111121111111-1-2121111111-121111111111---1--14---1-222---11---2-------------1--1-2-1-1---------1---------------12334b56425B799164234-114 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 635 STR:RPRED 94.5 SQ:SECSTR cEEEEcTTccccHHHHHHHHHHHHHTTTccccEEEcccccccHHHHHHHHHHTEEEEcccccccTTEEEEcTTcccHHHHHHHHHTTcEEEEcccHHHHHHHHHHHHHHHTTcEEEEEccTTcHHHHHHHHHHHHTTccEEEEccGGGGGGGGGccEEEEEEcTTccHHHHHHHHHHHcEEEEccccccHHHHHHHHHHHHGGGccEEEEEccTTcHHHHHHHHHHHHHcccEEEEccGGGccGGGGTTccEEEEEEcTTccHHHHHHHHHHHHHccEETTHHHHHHHHHccccccTTcccEEEEEEEETTEEEEEETTTEEEEEcGGGccHHHHHcHHHHTccccEEEcEEEEEETTTTEEEEEcccccTTHHHHHHHHHHHHHHHHHHHHHHHccHHHHTTcTccHHHHHHHHHHHTTccHHHHHHTTHHHHTTTTccHHHHHHHHHHccTHHHHTTTccTTTHHHHHHHHHHHHHTcEEEEEEEEEEccTTHHHHHHHHHHHHcccTTTcccccccccEEEEEccccEEEEEEEEccGGGHHHcccGHHHHHHHHHHHHHTTTTcEEEEcEccccccEEEEGGGGcccccccHHHHccTTcEEEEEEEEEETTTTEEEEEccTTcHHcHHHH##################################### DISOP:02AL 625-662,672-673| PSIPRED cEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEccEEccHHHHHHHHHcccEEEccHHHcccccEEEEcccccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEEEccEEEEEccHHHHHccccHHEEEEEEccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHccEEEEEccccccccHHHHHHHHHHcccEEEcccHHHccHHHHccccEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEccEEEEEEccccEEEEEHHHHcccccccHHHHcccccEEEEEEEEEEccccEEEEEEHHccccHHHHHHHHHHccccEEEEEEEEEEccEEEEEEcEEEEEEHHHHcccccccHHHHcccEEEEEEEEEcccccEEEEEcccHHHHHHHHHHHHHccccccccEEEEEEEEEEccEEEEEEccEEEEEEHHHccHHHHccHHHHcccccEEEEEEEEEcccccEEEEEEccccHHHHHHHcccccccEEEEEEEEEEEEcEEEEEEcccEEEEEEcccccccccccHHHEEccccEEEEEEEEEEccccEEEEEEEEccccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHcc //