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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49716.1
DDBJ      :             phage integrase family protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  174/915 : Eukaryota  0/199 : Viruses  18/175   --->[See Alignment]
d.163.1
:376 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   66->156 2kd1A PDBj 4e-07 26.4 %
:RPS:PDB   60->361 2a3vB PDBj 1e-24 14.0 %
:RPS:SCOP  65->354 1p7dA  d.163.1.1 * 1e-15 13.6 %
:HMM:SCOP  160->356 1a0pA2 d.163.1.1 * 2.7e-29 27.2 %
:RPS:PFM   166->346 PF00589 * Phage_integrase 6e-10 34.9 %
:HMM:PFM   164->345 PF00589 * Phage_integrase 2.1e-25 30.4 158/173  
:HMM:PFM   65->134 PF02899 * Phage_integr_N 3.8e-06 26.1 69/84  
:HMM:PFM   23->91 PF10566 * Glyco_hydro_97 0.00063 15.9 69/643  
:BLT:SWISS 3->346 XERCL_THETN 2e-18 23.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49716.1 GT:GENE ABO49716.1 GT:PRODUCT phage integrase family protein GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(1258679..1259809) GB:FROM 1258679 GB:TO 1259809 GB:DIRECTION - GB:PRODUCT phage integrase family protein GB:NOTE PFAM: phage integrase family protein KEGG: chy:CHY_1702 prophage LambdaCh01, site-specific recombinase, phage integrase family GB:PROTEIN_ID ABO49716.1 GB:DB_XREF GI:134051745 InterPro:IPR002104 LENGTH 376 SQ:AASEQ MASFKKRPNGTWQATIYVGRDSNGKQLFKYVTCDSLKEAKSKAREIEQEIEEGRFVHLDNTRVVAWIEKWMETKTLSPSTRATYKSYIKNHYTPYFGNLKLKQLNEIHIKRFMAEKSKTVSQASVRRMTSVLKTSLADVMKQKSPAKDIKLPKEEKYTPRVPNDKEMETIHNAVRGTRDEPIVLLAAWCGLRRGEIFALRWNDIDWNNGTLRVDEAKSINEDNLYEDKRPKSENGLREVIVPEYLMGLLEDMRKPKKRKRKKKDQEPTNIVEISNNSDHQIFNMRPDSYSSYWAAFVRNKKLPEIRFHDLRHYHASWLYARGIPDQYAAQRLGHDIRVLKTIYQHLGLDRQHEIDNNIRQMYDNQNKKEETRQTSE GT:EXON 1|1-376:0| BL:SWS:NREP 1 BL:SWS:REP 3->346|XERCL_THETN|2e-18|23.8|341/391| SEG 253->263|rkpkkrkrkkk| BL:PDB:NREP 1 BL:PDB:REP 66->156|2kd1A|4e-07|26.4|91/118| RP:PDB:NREP 1 RP:PDB:REP 60->361|2a3vB|1e-24|14.0|301/320| RP:PFM:NREP 1 RP:PFM:REP 166->346|PF00589|6e-10|34.9|152/168|Phage_integrase| HM:PFM:NREP 3 HM:PFM:REP 164->345|PF00589|2.1e-25|30.4|158/173|Phage_integrase| HM:PFM:REP 65->134|PF02899|3.8e-06|26.1|69/84|Phage_integr_N| HM:PFM:REP 23->91|PF10566|0.00063|15.9|69/643|Glyco_hydro_97| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 1 RP:SCP:REP 65->354|1p7dA|1e-15|13.6|265/280|d.163.1.1| HM:SCP:REP 160->356|1a0pA2|2.7e-29|27.2|169/182|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 291 OP:NHOMOORG 192 OP:PATTERN -------------------------------------------------------------------- -----1--------111----1--2-11111132121--1-2-21---1---2--------13-2-223---111----1-13------1-1--------------1-----------------------------------12-1-------------------------------------1-------1--111113-1-21-111-122-1-12--221--3--1--1-22-1---31---21--11--82---1-3--241--21-22-1-321211112-1--1---1---1---2332-21----21112122221411-32---1--32224231---1-211-111-2-35111-11-313-----------------1---1----------------1-1-1------1----------------1---------------------------------------------------------------21-----------------1-------------------------------------------------1---1----------------------------1--------------------2--------------------1------------------1-----------------------------------------------------------------------------------------------------11-1-------------------------1------------------1-----------------1-----1----1------------------------------------------------------------------------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------111-------------------------------------111---1--11-------11-----1---1----1---1--------------11--------------------1----------------- STR:NPRED 303 STR:RPRED 80.6 SQ:SECSTR ##########################################################HccHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHTTTTTccGGGccHHHHHHHHHHcTTcccHHHHHHHHHHHHHHHHTcccccccccccccccTTcccccccccHHHHHHHHHHccTTcHHHHHHHHHHcccHHHHHTccGGGEETTTTEEEEccccTTccEEEEccGGGHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHcTTGGGcGGGccccEEEEEEEETTTTEHHHHHHTccccccHHHHHHHHHHHHHHTTccHHHHHHHcccccHHHHHHHHHHHHTcTTTcccGGGTc############### DISOP:02AL 366-377| PSIPRED ccEEEEccccEEEEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHcccHHHEEccccEEEEcccccccccccEEcccccccccEEEEEccHHHHHHHHHHHHHHHHHHHcccccccccEEEccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccHHHHHHHccc //