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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49795.1
DDBJ      :             ATP-dependent DNA helicase RecQ
Swiss-Prot:             

Homologs  Archaea  26/68 : Bacteria  754/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
a.4.13a.4.5a.60.8c.37.1
:707 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->503 1oyyA PDBj e-101 38.8 %
:BLT:PDB   531->591 1wudB PDBj 1e-06 48.2 %
:RPS:PDB   11->425 1cu1A PDBj 5e-50 9.5 %
:RPS:PDB   403->510 2axlA PDBj 4e-21 20.6 %
:RPS:PDB   495->613 2cprA PDBj 2e-20 10.4 %
:RPS:SCOP  4->199 1oywA2  c.37.1.19 * 2e-58 45.6 %
:RPS:SCOP  201->400 1oywA3  c.37.1.19 * 9e-27 39.4 %
:RPS:SCOP  406->507 2axlA1  a.4.5.43 * 9e-23 22.8 %
:RPS:SCOP  517->591 1wudA1  a.60.8.1 * 4e-23 44.0 %
:RPS:SCOP  618->647 1iw7F2  a.4.13.2 * 5e-04 6.7 %
:HMM:SCOP  56->347 1wp9A2 c.37.1.19 * 1.5e-60 27.6 %
:HMM:SCOP  397->541 2axlA1 a.4.5.43 * 2.8e-40 45.4 %
:HMM:SCOP  513->593 1d8bA_ a.60.8.1 * 1.1e-22 48.1 %
:RPS:PFM   249->322 PF00271 * Helicase_C 1e-09 33.8 %
:RPS:PFM   406->503 PF09382 * RQC 3e-20 44.9 %
:RPS:PFM   517->584 PF00570 * HRDC 1e-12 44.1 %
:HMM:PFM   406->507 PF09382 * RQC 1.6e-29 38.2 102/106  
:HMM:PFM   249->324 PF00271 * Helicase_C 1.9e-23 38.2 76/78  
:HMM:PFM   518->584 PF00570 * HRDC 1.4e-24 40.3 67/68  
:HMM:PFM   21->182 PF00270 * DEAD 9.5e-23 19.6 153/167  
:HMM:PFM   623->645 PF08281 * Sigma70_r4_2 0.00022 39.1 23/54  
:BLT:SWISS 1->589 RECQ_BACSU e-170 49.2 %
:BLT:SWISS 620->703 YPBB_BACSU 2e-08 28.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49795.1 GT:GENE ABO49795.1 GT:PRODUCT ATP-dependent DNA helicase RecQ GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 1338720..1340843 GB:FROM 1338720 GB:TO 1340843 GB:DIRECTION + GB:PRODUCT ATP-dependent DNA helicase RecQ GB:NOTE KEGG: ctc:CTC02090 ATP-dependent DNA helicase recQ TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein SMART: DEAD-like helicases-like GB:PROTEIN_ID ABO49795.1 GB:DB_XREF GI:134051824 InterPro:IPR001650 InterPro:IPR002121 InterPro:IPR004589 InterPro:IPR006293 InterPro:IPR011545 InterPro:IPR014001 InterPro:IPR014021 LENGTH 707 SQ:AASEQ MLKKARQILKQYFGYSSFKSGQDKILNNILQGKDTLGIMPTGGGKSICYQIPALMFQGTTLVISPLISLMKDQVDALNSLGIAATFINSSLDSDEVEKRIFDSGHGKYKLLYVAPERLESKRFINSIKSLSISMLAVDEAHCVSQWGHDFRPSYLAINTVVKELDKRPVVTAFTATATEEVTQDIVRLLSLKTPKIYVAGFNRENLSFTVIRGENKKDFISDYLARNKGQAGVIYAATRKEVDNLEHWLQRKGYAVGKYHAGLNDDERIRNQEKFIYDDLQIMVATNAFGMGIDKSNVRYVIHYNMPKNMEAYYQEAGRAGRDGEPSQCILLFSSQDVQIQKFLIEQNQVPVERKVNEYKKLQAMVDYCHTTHCLRGTILKYFGEENVPKECGNCSNCNDYNELVDRTVESQKIFSCILRMQEQYGVSLVANVLKGSQNKKVIQNGFNRLSTYGLMKEYTTKEISDLIHILIAEGYIYLTEGQYPVAKLQPKAIPVLKGKEKVLQKVRKKESIKEADNSLYNQLLNLRKEISQRNNVPPYIVFSDSTLREMCVHYPTNEIEMLNIKGVGQVKLEHFGKEFMEVIKKYLKGNVNNKETDQELLQQSARDKGLPSYVVSLNMFREGFSLQEIARQRKIKPVTVQDHIIRCGVEGYDIVWDQFIPTEFEELILQKIEELGTNKLKPIKEELPNTIDYMAIKAVICKYKLQ GT:EXON 1|1-707:0| BL:SWS:NREP 2 BL:SWS:REP 1->589|RECQ_BACSU|e-170|49.2|587/591| BL:SWS:REP 620->703|YPBB_BACSU|2e-08|28.6|84/352| SEG 169->182|vvtaftatateevt| BL:PDB:NREP 2 BL:PDB:REP 5->503|1oyyA|e-101|38.8|492/512| BL:PDB:REP 531->591|1wudB|1e-06|48.2|56/71| RP:PDB:NREP 3 RP:PDB:REP 11->425|1cu1A|5e-50|9.5|379/645| RP:PDB:REP 403->510|2axlA|4e-21|20.6|107/144| RP:PDB:REP 495->613|2cprA|2e-20|10.4|115/124| RP:PFM:NREP 3 RP:PFM:REP 249->322|PF00271|1e-09|33.8|74/76|Helicase_C| RP:PFM:REP 406->503|PF09382|3e-20|44.9|98/103|RQC| RP:PFM:REP 517->584|PF00570|1e-12|44.1|68/68|HRDC| HM:PFM:NREP 5 HM:PFM:REP 406->507|PF09382|1.6e-29|38.2|102/106|RQC| HM:PFM:REP 249->324|PF00271|1.9e-23|38.2|76/78|Helicase_C| HM:PFM:REP 518->584|PF00570|1.4e-24|40.3|67/68|HRDC| HM:PFM:REP 21->182|PF00270|9.5e-23|19.6|153/167|DEAD| HM:PFM:REP 623->645|PF08281|0.00022|39.1|23/54|Sigma70_r4_2| GO:PFM:NREP 8 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| GO:PFM GO:0006260|"GO:DNA replication"|PF09382|IPR018982| GO:PFM GO:0006281|"GO:DNA repair"|PF09382|IPR018982| GO:PFM GO:0043140|"GO:ATP-dependent 3'-5' DNA helicase activity"|PF09382|IPR018982| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00570|IPR002121| GO:PFM GO:0005622|"GO:intracellular"|PF00570|IPR002121| RP:SCP:NREP 5 RP:SCP:REP 4->199|1oywA2|2e-58|45.6|195/206|c.37.1.19| RP:SCP:REP 201->400|1oywA3|9e-27|39.4|198/200|c.37.1.19| RP:SCP:REP 406->507|2axlA1|9e-23|22.8|101/144|a.4.5.43| RP:SCP:REP 517->591|1wudA1|4e-23|44.0|75/77|a.60.8.1| RP:SCP:REP 618->647|1iw7F2|5e-04|6.7|30/100|a.4.13.2| HM:SCP:REP 56->347|1wp9A2|1.5e-60|27.6|268/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 397->541|2axlA1|2.8e-40|45.4|141/0|a.4.5.43|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 513->593|1d8bA_|1.1e-22|48.1|81/0|a.60.8.1|1/1|HRDC-like| OP:NHOMO 4157 OP:NHOMOORG 979 OP:PATTERN 11-------------------------------111-11111121121-1223-----1-11--1-11 213-2112111-1---1----1---5------23334211-42431212442333313--3222314332-12221111233---11-555624332--43435455534--------------221-232222121221-111213323433111111121122123444-11-1111---13111---1135777777875777777444445776333534355555555533333333333333444444343443333344334443333233311121111222222222222222222222222222112221112-434744444445451433434424-2-1221-5344-1111--1---213-61112112-1122221--1211111111111111-1111311112211221121111111112221142442212222222221121111-------------------------11--111121222222222222111122331111112222312-2222214332323323332432111111111423342423-3-32122--1-1312223342212622-1----------1-11111115111422664334715456877796768676778758----1-1--1---11111111332112111-11112211211-1111111111111211111111111111111111211122-1111111111111--3111112222332241111111111111111111111111343423444432222442511111111116445454455886633555554443333--2-333333--------21-11111-----------1---1-11-21122------44 9967AA51H45489C858847A7789688888856667678996779B6664BC996A745456545214646563534445567497-7E859HP98898I9D9B56M9hBOADEJ8A969D9OIAG8**J1GFJ7BA7I6BDE6CB87FA5OBGAAHCGEHFEP8K8I*GLRC699B*898B9GGJO8GG99BCAE6 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 613 STR:RPRED 86.7 SQ:SECSTR HHHHHHHHHHHHHHHHccccccccccccccccEEEEEEccccccTTTHHHHHHHTTTccEEEEEccHHHHHHHHHHHHHHTccccEEEcEccTTccHHHccccccccccEEEEEHHHHHHHTcccTTcccEEEEETTTcccHHHHHHHHHHHHHTTTTTccEEEEEEccEEEEEccccTTcHcHHHHHcccEcTTccccccTTEEEEEccccccEEETTEEEcGGGTcccEEEEEccccHHHHHHHHHHHHTTccEEEEcTTcccccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEEEcccccEEEEEEccHHHHHHHHTTEEEccccccEEEEEccccccccccccHHHHHHHHHHHHHTccccHHHHHHHHHHHHHcTTcccccccHHHHHHHHHTcccccHHHHHHHHHHccccHcTTHHHHTHHHHHHHTTccccccccEEEEEcGGGGcHHHHHHTTcccEEHHHHHHHHHHHHHHHTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccccccHHHHHHHHHHHHHHHHHcccccHHHHHTcccccTTTTTTHHHHHHHHHHHHHHTHTcccccccccccccccccccc############################################################################################## DISOP:02AL 1-4,101-101,496-520,587-614| PSIPRED cHHHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHHcccccEEEEcHHHHHHHHHHcccccccccEEEEEcHHHHHHcccccHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHccccccEEEEccccccEEEEEEEccccHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEccccccHHHHHHHHHHHHcccccEEEEcHHHHcccccccccEEEEccccccHHHHHHHHccccccccccEEEEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHccccccccccccEEEccHHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHcccccccccccccccHHHHHHHHHHHHHcccEEEccccccEEEEccHHHHcccccHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEEccHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHccccccHHHcccHHHHHHHHHHHHcccccccHHHHHHccccccHHHHHHEEEEEccc //