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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49836.1
DDBJ      :             Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  281/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.1.2b.84.1c.142.1d.15.13d.58.1
:440 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->255 3i9v1 PDBj 5e-10 29.1 %
:RPS:PDB   174->312 1d0cB PDBj 2e-05 9.5 %
:RPS:PDB   383->435 3cdxF PDBj 2e-06 20.8 %
:RPS:SCOP  4->171 2fug12  c.142.1.1 * 9e-27 24.4 %
:RPS:SCOP  163->229 2fug13  d.15.13.1 * 2e-07 34.3 %
:RPS:SCOP  252->307 2fug91  d.58.1.5 * 2e-06 26.8 %
:RPS:SCOP  387->432 2pnrC1  b.84.1.1 * 4e-05 21.7 %
:HMM:SCOP  4->169 2fug12 c.142.1.1 * 1.3e-42 38.6 %
:HMM:SCOP  160->229 2fug13 d.15.13.1 * 2.3e-12 38.6 %
:HMM:SCOP  206->328 1nekB1 a.1.2.1 * 3.9e-14 19.3 %
:HMM:SCOP  364->433 1o78A_ b.84.1.1 * 3.9e-05 24.3 %
:RPS:PFM   22->150 PF01512 * Complex1_51K 2e-14 36.4 %
:RPS:PFM   352->437 PF04952 * AstE_AspA 2e-04 32.6 %
:HMM:PFM   9->149 PF01512 * Complex1_51K 2.1e-48 42.6 141/151  
:HMM:PFM   163->208 PF10531 * SLBB 4.5e-10 47.8 46/59  
:HMM:PFM   251->265 PF00037 * Fer4 1.5e-05 46.7 15/24  
:HMM:PFM   295->308 PF00037 * Fer4 0.00048 42.9 14/24  
:HMM:PFM   206->235 PF00205 * TPP_enzyme_M 3.9e-05 43.3 30/137  
:HMM:PFM   391->427 PF00364 * Biotin_lipoyl 3.6e-05 35.1 37/74  
:BLT:SWISS 5->310 RNFC_SALTY 3e-35 32.1 %
:PROS 252->263|PS00198|4FE4S_FER_1
:PROS 296->307|PS00198|4FE4S_FER_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49836.1 GT:GENE ABO49836.1 GT:PRODUCT Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 1392594..1393916 GB:FROM 1392594 GB:TO 1393916 GB:DIRECTION + GB:PRODUCT Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit GB:NOTE PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit KEGG: dsy:DSY0411 hypothetical protein GB:PROTEIN_ID ABO49836.1 GB:DB_XREF GI:134051865 InterPro:IPR001450 InterPro:IPR011538 LENGTH 440 SQ:AASEQ MSGDVVRAIHDAGVVGAGGAGFPTHVKTSAKVDCVIINGAECEPLLRVDQQLMRDMPRNLLKGLSMLLDAVGAKRGVIALKKKYTVAIEQLSSCITDPRIEIFKLDDFYPAGDEQVMVREVTGKSIPEAGIPLQVDCIVSNVETVLNVAASLEGQPVTDTWLTVTGRVTEPFTCQAPIGTSKREILAQAGVQKQEGLALIEGGPMMGKLVEDWDTPVTKTTKGLIVVPEDHPLVTARKAPLEVYLRQARSVCMGCARCTEMCPRNLLGHNLQPHLIMRAMAYGKADSQAIKSSLLCCECGVCEYACPMRLSPRWVNTSLKGQLVAAGIRYQGDGTEPEAAKSRDERKIPVKRLISRLALKEYDKPAPVKELANKPKKVTILLRQHIGVPCQPVVEVGDLVERGQLIGEIPEGKLGARVHASIDGVVLEQNVAQVVIQALD GT:EXON 1|1-440:0| BL:SWS:NREP 1 BL:SWS:REP 5->310|RNFC_SALTY|3e-35|32.1|290/735| PROS 252->263|PS00198|4FE4S_FER_1|PDOC00176| PROS 296->307|PS00198|4FE4S_FER_1|PDOC00176| SEG 12->21|agvvgaggag| BL:PDB:NREP 1 BL:PDB:REP 22->255|3i9v1|5e-10|29.1|234/437| RP:PDB:NREP 2 RP:PDB:REP 174->312|1d0cB|2e-05|9.5|137/414| RP:PDB:REP 383->435|3cdxF|2e-06|20.8|53/328| RP:PFM:NREP 2 RP:PFM:REP 22->150|PF01512|2e-14|36.4|129/162|Complex1_51K| RP:PFM:REP 352->437|PF04952|2e-04|32.6|86/277|AstE_AspA| HM:PFM:NREP 6 HM:PFM:REP 9->149|PF01512|2.1e-48|42.6|141/151|Complex1_51K| HM:PFM:REP 163->208|PF10531|4.5e-10|47.8|46/59|SLBB| HM:PFM:REP 251->265|PF00037|1.5e-05|46.7|15/24|Fer4| HM:PFM:REP 295->308|PF00037|0.00048|42.9|14/24|Fer4| HM:PFM:REP 206->235|PF00205|3.9e-05|43.3|30/137|TPP_enzyme_M| HM:PFM:REP 391->427|PF00364|3.6e-05|35.1|37/74|Biotin_lipoyl| GO:PFM:NREP 6 GO:PFM GO:0010181|"GO:FMN binding"|PF01512|IPR011538| GO:PFM GO:0016651|"GO:oxidoreductase activity, acting on NADH or NADPH"|PF01512|IPR011538| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF01512|IPR011538| GO:PFM GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|PF01512|IPR011538| GO:PFM GO:0008152|"GO:metabolic process"|PF04952|IPR007036| GO:PFM GO:0016788|"GO:hydrolase activity, acting on ester bonds"|PF04952|IPR007036| RP:SCP:NREP 4 RP:SCP:REP 4->171|2fug12|9e-27|24.4|164/243|c.142.1.1| RP:SCP:REP 163->229|2fug13|2e-07|34.3|67/84|d.15.13.1| RP:SCP:REP 252->307|2fug91|2e-06|26.8|56/154|d.58.1.5| RP:SCP:REP 387->432|2pnrC1|4e-05|21.7|46/61|b.84.1.1| HM:SCP:REP 4->169|2fug12|1.3e-42|38.6|166/0|c.142.1.1|1/1|Nqo1 FMN-binding domain-like| HM:SCP:REP 160->229|2fug13|2.3e-12|38.6|70/0|d.15.13.1|1/1|Nqo1 middle domain-like| HM:SCP:REP 206->328|1nekB1|3.9e-14|19.3|119/0|a.1.2.1|1/1|alpha-helical ferredoxin| HM:SCP:REP 364->433|1o78A_|3.9e-05|24.3|70/0|b.84.1.1|1/1|Single hybrid motif| OP:NHOMO 395 OP:NHOMOORG 283 OP:PATTERN -------------------------------------------------11----------------- --2-1---------------------------------------------------------------------------1-2-----1111-111--------------------------------1-111-11----------111-11------------1--11-------------------11-----------------------------------111111---------------------------------------------------------------------------------------------54-23554565232-255111-21111111--22-21-14--11-1-11---------------------------------------------------------------------1111----------------1------------------------------------1---------------------------------------------------21-1--2----------222-22241122-311-----1---2-------11---------------------------113121111111211111111111111111--11131-1-11121111111111111121-1111121111112111112222111112222222222222222111111121-211111111111---1---------211-1111111111111111-------1--211111----1-1--2------------111111111111111--------------1111--------------1-1-------------------------1211121222-1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 366 STR:RPRED 83.2 SQ:SECSTR #####################ccHHHHHTccccEEEEEcccccTTcccHHHHHHHcHHHHHHHHHHHHHHHTccEEEEEEcTTcHHHHHHHHHHHHHHHEEEEEccccGGGGcHHHHHHHHTTccccccccccTTTEEEEEHHHHHTHHHHHHHTccccEEEEEEccccccEEcccccccTTcccTTcccccccccccEccccccHHHHHHHHHHHHHHHHHHTTcTTcHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHTcTTcTTGGGTTccEEEEccccccHHHHHHHHHHHHHHHGGGcccc##################################################EEETTTcccEEEEEEcccTEEccccEEEEEcccTTcEEcTTcEEEEEEcTTccEEEEccccEEEEEEEcccEEEc### DISOP:02AL 1-1,332-341| PSIPRED ccHHHHHHHHHccccccccccccccccccccccEEEEEccccccccHHHHHHHHHcHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHcccccccccccccccEEEEccHHHHHHHHHHccccccEEEEEEEcccccccEEEEEccccHHHHHHHHcccccccEEEEEccccccccHHHccccHHccccEEEEEcccccHHHHHHHHHHHHccccHHHcccccccccccEEEEccccccHHHHHHHHHcccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHcccccEEEEEEccccccccccccccccEEEccccccccccccccccccccccEEEEEEEccEEEEEEcc //