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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO49880.1
DDBJ      :             diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
Swiss-Prot:             

Homologs  Archaea  6/68 : Bacteria  668/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
c.1.33d.110.2d.110.3d.58.29
:947 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   327->462 1ykdA PDBj 1e-04 28.5 %
:BLT:PDB   519->679 3iclA PDBj 1e-38 48.4 %
:BLT:PDB   700->926 2r6oA PDBj 9e-54 47.1 %
:RPS:PDB   78->186 1dp8A PDBj 2e-12 12.1 %
:RPS:PDB   220->321 3b33A PDBj 1e-08 14.0 %
:RPS:PDB   352->499 3e0yA PDBj 3e-15 18.4 %
:RPS:PDB   517->923 2btvA PDBj 2e-73 9.3 %
:RPS:SCOP  78->175 1oj5A  d.110.3.8 * 2e-10 11.2 %
:RPS:SCOP  219->322 2oolA2  d.110.3.9 * 6e-09 10.9 %
:RPS:SCOP  335->513 1mc0A1  d.110.2.1 * 2e-19 9.7 %
:RPS:SCOP  521->679 1w25A3  d.58.29.2 * 2e-47 33.3 %
:RPS:SCOP  703->930 2basA1  c.1.33.1 * 7e-70 22.7 %
:HMM:SCOP  47->177 1ew0A_ d.110.3.2 * 2.5e-14 24.8 %
:HMM:SCOP  175->319 1nwzA_ d.110.3.1 * 2.8e-14 25.6 %
:HMM:SCOP  334->518 1mc0A1 d.110.2.1 * 2e-32 36.3 %
:HMM:SCOP  521->680 1w25A3 d.58.29.2 * 3e-64 48.4 %
:HMM:SCOP  692->940 2basA1 c.1.33.1 * 9.7e-96 55.9 %
:RPS:PFM   78->181 PF08448 * PAS_4 2e-07 28.7 %
:RPS:PFM   221->264 PF00989 * PAS 5e-04 36.4 %
:RPS:PFM   354->459 PF01590 * GAF 1e-08 33.3 %
:RPS:PFM   516->672 PF00990 * GGDEF 5e-44 51.6 %
:RPS:PFM   703->928 PF00563 * EAL 9e-75 56.9 %
:HMM:PFM   693->928 PF00563 * EAL 4.2e-77 45.7 232/236  
:HMM:PFM   516->673 PF00990 * GGDEF 1.7e-57 46.2 158/161  
:HMM:PFM   78->180 PF08448 * PAS_4 3.8e-15 29.3 99/110  
:HMM:PFM   219->286 PF00989 * PAS 1e-11 30.9 68/113  
:HMM:PFM   353->489 PF01590 * GAF 1.1e-12 26.3 137/154  
:BLT:SWISS 23->259 DHKD_DICDI 4e-12 26.4 %
:BLT:SWISS 330->461 NIFA_AZOLI 2e-06 25.6 %
:BLT:SWISS 507->934 Y1727_PSEAE e-114 48.2 %
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO49880.1 GT:GENE ABO49880.1 GT:PRODUCT diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(1440442..1443285) GB:FROM 1440442 GB:TO 1443285 GB:DIRECTION - GB:PRODUCT diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) GB:NOTE KEGG: gme:Gmet_0957 diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with GAF sensor TIGRFAM: PAS sensor protein; diguanylate cyclase PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-4 domain protein; PAS fold domain protein SMART: PAS domain containing protein; PAC repeat-containing protein GB:PROTEIN_ID ABO49880.1 GB:DB_XREF GI:134051909 InterPro:IPR000014 InterPro:IPR000160 InterPro:IPR000700 InterPro:IPR001610 InterPro:IPR001633 InterPro:IPR003018 InterPro:IPR013656 InterPro:IPR013767 LENGTH 947 SQ:AASEQ MISSTRHLFFPFNKFTVLDFGNHYFIQQLPQKCNDKKNCLMQEENKITTEVSSLENLKQEEQGLKDYIDNLITLNAKLSTDGTVLLINETALRTFHMQPEEVVGKKLWDTPWWSYDADLHTQLKNAVKQAATGQTIYYETINHLVSGKKIYIYFTLNPVLNKNNEVIYLVAEGRDITKRKMIEQDLISTNQELVAANEELISIEEELRISNKEIYLAHERLNNILESITDAFYAVNHQWEVTYVNTEAEKLLHKKRLDIIGKNIWQEFSEMVHTKFYHILHQVMSEQIYQQFEYFFQPTGKWFNIHAYPSSDGLSIYFHDITEYKLVQEKMSLQNQYLSSLHETTLALMNRLNLDELLKAIVTRSAELSGTDHGFIFLIDNNNPSELVLRFGTGTYKQMVGIRLKPGEGMVGTVWQTGEPLIVKDYSSWPGKSSIFSHIKIHGGIALPLKSEGKINGILGIIYIEKNQNLESNNLSLLTGFAQLASIALDNANLYQAAQQELAERKRIEEILRYLAYHDSLTELPNRTLFNDRLSMALNQAHRNKNKLAVMFLDLDHFKKVNDTLGHDIGDQLLKGIAQRFSKLLRKGDTIARIGGDEFTILLHNITRAENASIVADKIIDTLANPWIIGNHEFHITTSIGIALYPDDGTDAESLLKNADAAMYQAKEMGRNNYQFYTPTMNAQTLRRFELENNLRRALDRKEFVIYYQPQVEIHTGKIVGVEALIRWQHPQRGMISPAEFIPMAEETGLIIPIGEWILRRACAQNKAWQDRGFSPMRVTVNLSARQFLQPHLPQYISNVLEDTGLGPQWLELEITESLAMKDVAFTEKTLIELRKMGITLAIDDFGTGYSSLNYLKRLPIDILKIDRSFIHDLNTESDDVAIISAIITLGHNLKMKVVAEGVETKEQLMFLRQQQCDLMQGYLFTKPLPVRELEQKYLSNNTKLFC GT:EXON 1|1-947:0| BL:SWS:NREP 3 BL:SWS:REP 23->259|DHKD_DICDI|4e-12|26.4|208/1546| BL:SWS:REP 330->461|NIFA_AZOLI|2e-06|25.6|129/624| BL:SWS:REP 507->934|Y1727_PSEAE|e-114|48.2|427/685| COIL:NAA 41 COIL:NSEG 2 COIL:REGION 52->66| COIL:REGION 184->209| SEG 198->210|eelisieeelris| SEG 286->297|eqiyqqfeyffq| SEG 467->478|nqnlesnnlsll| SEG 686->699|lrrfelennlrral| BL:PDB:NREP 3 BL:PDB:REP 327->462|1ykdA|1e-04|28.5|130/383| BL:PDB:REP 519->679|3iclA|1e-38|48.4|159/159| BL:PDB:REP 700->926|2r6oA|9e-54|47.1|223/253| RP:PDB:NREP 4 RP:PDB:REP 78->186|1dp8A|2e-12|12.1|107/118| RP:PDB:REP 220->321|3b33A|1e-08|14.0|100/105| RP:PDB:REP 352->499|3e0yA|3e-15|18.4|136/153| RP:PDB:REP 517->923|2btvA|2e-73|9.3|377/845| RP:PFM:NREP 5 RP:PFM:REP 78->181|PF08448|2e-07|28.7|101/111|PAS_4| RP:PFM:REP 221->264|PF00989|5e-04|36.4|44/112|PAS| RP:PFM:REP 354->459|PF01590|1e-08|33.3|105/143|GAF| RP:PFM:REP 516->672|PF00990|5e-44|51.6|157/160|GGDEF| RP:PFM:REP 703->928|PF00563|9e-75|56.9|225/236|EAL| HM:PFM:NREP 5 HM:PFM:REP 693->928|PF00563|4.2e-77|45.7|232/236|EAL| HM:PFM:REP 516->673|PF00990|1.7e-57|46.2|158/161|GGDEF| HM:PFM:REP 78->180|PF08448|3.8e-15|29.3|99/110|PAS_4| HM:PFM:REP 219->286|PF00989|1e-11|30.9|68/113|PAS| HM:PFM:REP 353->489|PF01590|1.1e-12|26.3|137/154|GAF| GO:PFM:NREP 1 GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00989|IPR013767| RP:SCP:NREP 5 RP:SCP:REP 78->175|1oj5A|2e-10|11.2|98/105|d.110.3.8| RP:SCP:REP 219->322|2oolA2|6e-09|10.9|101/110|d.110.3.9| RP:SCP:REP 335->513|1mc0A1|2e-19|9.7|175/187|d.110.2.1| RP:SCP:REP 521->679|1w25A3|2e-47|33.3|159/162|d.58.29.2| RP:SCP:REP 703->930|2basA1|7e-70|22.7|220/257|c.1.33.1| HM:SCP:REP 47->177|1ew0A_|2.5e-14|24.8|125/130|d.110.3.2|1/2|PYP-like sensor domain (PAS domain)| HM:SCP:REP 175->319|1nwzA_|2.8e-14|25.6|117/0|d.110.3.1|2/3|PYP-like sensor domain (PAS domain)| HM:SCP:REP 334->518|1mc0A1|2e-32|36.3|182/0|d.110.2.1|1/1|GAF domain-like| HM:SCP:REP 521->680|1w25A3|3e-64|48.4|159/0|d.58.29.2|1/1|Nucleotide cyclase| HM:SCP:REP 692->940|2basA1|9.7e-96|55.9|245/0|c.1.33.1|1/1|EAL domain-like| OP:NHOMO 11327 OP:NHOMOORG 685 OP:PATTERN ------------------------4--2--12-----------21----------------------- KB2AD---111---15422-2I44-122222-C6667G75EKEd*-------668-----CB3-H4M6763----1----I27CHPBB--------------------92---------------11111111161CDD9A111B5wXZNPP233II---4--FQ92JIN4------------R7F64881AC2888887892989998-33333999596I3PO666666CG11111111111111111111--2---3----3311-1-111-1-----------------------------------------------6EBAN8888888A7C3XCB6798C68--7HE8ALKJE885AA633462--D5C9CC71111139cXWC9JeWPYb6798689798J-aXRTTCTUCW61MUUTYbRadgIJZHCID4C4DGAC9C6--------HHH5-tFa11111111222222222222222121111-BBKC5IFD52OLLLNNJ9998KKchDDDD7COXaITLd-3UTOdLgNQg24qA7XYZWOcikR-------99JRou6MSILMQTDqXONP1KLLeINHZU6586E765O997-111111---------aMXXI43mgKiogxWuew*zxyytxkxtshpplfh**---EgKk------OSNF5XDPQQOPOQQQN-NQNSPKJPOOOOOMOONOSRUOJM---HBEHHHGGGGHIHHHHHFEBBAGI1-H67777756777---Y12-2-KNLLGA*Ky---------------BABBB4A13-KfaadYemginecddYabe-----2---fVedXllkkjqpk**TUUVUUSLMQ4444--e2EEB9JK2222222281C-------------------------D85CA7A777-1- ----21-----------------------------------------------------------------------------------------1--------------------------------------------------------------3----6-1-------E3----------2--E-----B---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 875 STR:RPRED 92.4 SQ:SECSTR ##########################################ccccTTcccc##HHHHHHTccHHHHHTTcccEEEEEETTccEEEEcHHHHHHHcccHHHHTTccGGGGccTTHHHHHHHHHHHHHHHcccccTTTEEEEEEcTTccEEEEEEEEEEEEcEETTEEEEEEEEEEcHHHHHHHHHHHHccc###################cccGGGcHcTTcccEEcTTEEEEEEcTTccEEEEETTHHHHccccccTTccccHHHHcHHHHHHHHHHHTcccccEEEEEEccccccEEEEEEEETTEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHTTcGGGGccHHHHHHHHHHHHHHHTTcccEEEEEEETTcEEEEEEEEEEcccGGGTTcEEETTTccHHHHHHHcccEEEEEEcccTTccHHHHccccEEEEEEEEEccccEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHEEEEccccHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHTTEEEccGGGcccGGGGEEEcccccccccHHHHHHcTTTHHHHHHHHHHHHccEEEEEcccHHHHHTTccEEccccHHTccccccccGGGGGGcccHcHHHHHHHHHHHHHHHTccccEEcccccccGGGccHHHHHHHHGGGcHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHHHHTTcccccccEEccccccTTcGGGGcccTTTcHHccccccccccEEccccccccccccEEcGGGcccccccccTTTcccccccHHHHHHHHHHHHHccHHHHHHHHTTHHHHHHHHHHHHHHHHTTcccTTcTccHHHHHHHHHHHHHccccccccEEccccTTHHHHHHTcEEEEEEccTTHTcccccccccTTTT######### DISOP:02AL 1-3,54-58| PSIPRED ccccccEEEEEcccEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccEEEEEcHHHHHHHcccHHHHccccHHHHHcccccHHHHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEEEEEEEcccccEEEEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccEEEEEcHHHHHHHcccHHHHccccHHHHccHHHHHHHHHHHHHHHccccEEEEEEEEcccccEEEEEEEEEEcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHccccEEEEEEEccccccEEEEEcccHHHHHHHcccccccccHHHHHHHcccEEEEcccccccHHHHHHHHcccHHHHHEHHHcccccEEEEEEcccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHccHHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEcccccHHHHHHHHHHHHHHHHccEEEccEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEEEcccccEEEEEEEEEEEcccccEEcHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEccHHHHcccHHHHHHHHHHHHccccHHHEEEEEEHHHHHccHHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHccccEEEEcHHHHccccccHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccEEEEccccccccHHHHHHHHHHccccccc //