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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50080.1
DDBJ      :             diguanylate cyclase with PAS/PAC sensor
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  648/915 : Eukaryota  10/199 : Viruses  0/175   --->[See Alignment]
a.211.1a.248.1a.274.1d.110.3d.133.1d.58.29f.55.1
:971 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   497->601 3bwlD PDBj 2e-04 33.3 %
:BLT:PDB   629->779 3i5aA PDBj 3e-16 37.3 %
:RPS:PDB   69->134 2a71B PDBj 3e-04 21.2 %
:RPS:PDB   299->351 2aswA PDBj 1e-05 32.7 %
:RPS:PDB   357->494 3bwlD PDBj 5e-06 15.2 %
:RPS:PDB   464->592 3bs2A PDBj 1e-14 8.8 %
:RPS:PDB   587->806 3cawA PDBj 8e-34 11.0 %
:RPS:PDB   792->965 3b57A PDBj 4e-29 12.8 %
:RPS:SCOP  299->351 2aswA1  a.274.1.1 * 6e-06 32.7 %
:RPS:SCOP  370->411 2fi0A1  a.248.1.1 * 1e-04 13.6 %
:RPS:SCOP  382->621 2axtC1  f.55.1.1 * 3e-18 7.0 %
:RPS:SCOP  638->779 1w25A3  d.58.29.2 * 6e-30 30.3 %
:RPS:SCOP  753->946 1dgjA4  d.133.1.1 * 5e-40 14.4 %
:HMM:SCOP  373->500 1p97A_ d.110.3.7 * 4.2e-13 32.7 %
:HMM:SCOP  494->620 1ew0A_ d.110.3.2 * 9.7e-26 31.7 %
:HMM:SCOP  638->787 1w25A3 d.58.29.2 * 7.9e-41 34.7 %
:HMM:SCOP  776->968 1xx7A_ a.211.1.1 * 6e-37 36.3 %
:RPS:PFM   53->206 PF05228 * CHASE4 4e-25 36.2 %
:RPS:PFM   374->498 PF08448 * PAS_4 2e-08 36.3 %
:RPS:PFM   514->619 PF00989 * PAS 3e-08 28.3 %
:RPS:PFM   633->779 PF00990 * GGDEF 9e-24 38.8 %
:RPS:PFM   808->925 PF01966 * HD 2e-06 41.1 %
:HMM:PFM   51->207 PF05228 * CHASE4 8.2e-50 41.3 155/161  
:HMM:PFM   634->780 PF00990 * GGDEF 8.9e-40 38.1 147/161  
:HMM:PFM   511->612 PF00989 * PAS 2e-13 23.5 102/113  
:HMM:PFM   377->498 PF08448 * PAS_4 7e-11 25.5 106/110  
:HMM:PFM   815->927 PF01966 * HD 1.6e-18 42.0 100/118  
:HMM:PFM   276->348 PF00672 * HAMP 1.9e-08 33.3 66/70  
:HMM:PFM   757->819 PF08849 * DUF1819 0.0006 23.8 63/191  
:BLT:SWISS 360->551 PHYB_ARATH 2e-07 26.9 %
:BLT:SWISS 630->779 YCDT_ECOLI 2e-23 35.3 %
:BLT:SWISS 794->959 RPFG_XANC8 8e-30 40.4 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50080.1 GT:GENE ABO50080.1 GT:PRODUCT diguanylate cyclase with PAS/PAC sensor GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 1685069..1687984 GB:FROM 1685069 GB:TO 1687984 GB:DIRECTION + GB:PRODUCT diguanylate cyclase with PAS/PAC sensor GB:NOTE KEGG: swo:Swol_0011 putative PAS/PAC sensor protein TIGRFAM: PAS sensor protein; diguanylate cyclase PFAM: GGDEF domain containing protein; histidine kinase, HAMP region domain protein; metal-dependent phosphohydrolase, HD sub domain; CHASE4 domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein SMART: PAS domain containing protein; metal-dependent phosphohydrolase, HD region GB:PROTEIN_ID ABO50080.1 GB:DB_XREF GI:134052109 InterPro:IPR000014 InterPro:IPR000160 InterPro:IPR000700 InterPro:IPR003607 InterPro:IPR003660 InterPro:IPR006674 InterPro:IPR007892 InterPro:IPR013655 InterPro:IPR013656 InterPro:IPR013767 LENGTH 971 SQ:AASEQ MTLSKKTKLIIYMTFIIFIIVIFGTSEFIVRKNLSELEEKVVNQNIERVRNVLSEDISSLNKLAMDWASWDDTYSFIQDANKAYIQSNLDDTTFIDQRLNIVLFINSSGRIVYGKGFDLEDDKEVSVPNSIKQYVSANSLLTRHSTIENGISGVILLPEGPMLISSRPILTTKNKGPIRGMLLMGRYLDTKQIKHLSQIVDLSLTIRDIKPTEMPPDFQEVLPLLKENPVFVSPLNSDFIAGYTLLNDVFGKPSLMLKVSMPRENYRTGQEAMFYVLILLVVTGFLVSRFIQHVLDKVILSRLTKLSVSVDSIGENGNLSGRVPMMKGQDEFSNLADNINGMLAALEQSHKSAKRYRKLVNKMSTAHQQLQNIIEFLPDATFVIDNDKKVIAWNLAIEKITGINKKDIIGKGDYAYSVPLYGKQIPMLIDLIGSEDREAEGKYEYVKRKGNTMFAEVFAPSFFGGKGAFLWGTASPLYDTKGNLVGAIESIRDITERKKIEKELNLQKAYFEQLFKNSPAGIVMLDNSDRIVKINRGFEKLFQYSISEVKGCYINQVIIPEKLLEEASILSNVVLTGEICQKETIRKRKDGSLVDVHILGYPILVNNQQVGIYIIYTDITERKQDEKRLKHISLHDALTGLYNRAYFEQEMTRLEKGRNNSVGIIMCDVDGLKLVNDTLGHNRGDELLLAATDVIRGSFRQSDMVARIGGDEFAILLTNSDSTEVERAAQRIKDAIAKYNKGNPKLPLNISIGFAVSNDLSLRMWDLFREADNNMYREKLYHSQSARSTIVQTLMKALEARDFITEGHADRLQDLVVRVARAIGLSENKVTDLRLLAKFHDIGKVGIPDRILFSEGPLTPEEFIEMQRHCEIGYRIAQSAPDLIPIADWILKHHEWWNGKGYPFGLKEKEIPLECRILTIADAYDAMTSERPYRKAMSHEEAVVELRKFAGVQFDPQLVGKFIEVFNTKKT GT:EXON 1|1-971:0| BL:SWS:NREP 3 BL:SWS:REP 360->551|PHYB_ARATH|2e-07|26.9|182/1172| BL:SWS:REP 630->779|YCDT_ECOLI|2e-23|35.3|150/452| BL:SWS:REP 794->959|RPFG_XANC8|8e-30|40.4|166/378| TM:NTM 2 TM:REGION 8->30| TM:REGION 276->298| SEG 10->23|iiymtfiifiivif| BL:PDB:NREP 2 BL:PDB:REP 497->601|3bwlD|2e-04|33.3|102/118| BL:PDB:REP 629->779|3i5aA|3e-16|37.3|150/319| RP:PDB:NREP 6 RP:PDB:REP 69->134|2a71B|3e-04|21.2|66/219| RP:PDB:REP 299->351|2aswA|1e-05|32.7|52/56| RP:PDB:REP 357->494|3bwlD|5e-06|15.2|117/118| RP:PDB:REP 464->592|3bs2A|1e-14|8.8|125/146| RP:PDB:REP 587->806|3cawA|8e-34|11.0|219/316| RP:PDB:REP 792->965|3b57A|4e-29|12.8|164/176| RP:PFM:NREP 5 RP:PFM:REP 53->206|PF05228|4e-25|36.2|152/160|CHASE4| RP:PFM:REP 374->498|PF08448|2e-08|36.3|102/111|PAS_4| RP:PFM:REP 514->619|PF00989|3e-08|28.3|106/112|PAS| RP:PFM:REP 633->779|PF00990|9e-24|38.8|147/160|GGDEF| RP:PFM:REP 808->925|PF01966|2e-06|41.1|107/117|HD| HM:PFM:NREP 7 HM:PFM:REP 51->207|PF05228|8.2e-50|41.3|155/161|CHASE4| HM:PFM:REP 634->780|PF00990|8.9e-40|38.1|147/161|GGDEF| HM:PFM:REP 511->612|PF00989|2e-13|23.5|102/113|PAS| HM:PFM:REP 377->498|PF08448|7e-11|25.5|106/110|PAS_4| HM:PFM:REP 815->927|PF01966|1.6e-18|42.0|100/118|HD| HM:PFM:REP 276->348|PF00672|1.9e-08|33.3|66/70|HAMP| HM:PFM:REP 757->819|PF08849|0.0006|23.8|63/191|DUF1819| GO:PFM:NREP 1 GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00989|IPR013767| RP:SCP:NREP 5 RP:SCP:REP 299->351|2aswA1|6e-06|32.7|52/54|a.274.1.1| RP:SCP:REP 370->411|2fi0A1|1e-04|13.6|42/79|a.248.1.1| RP:SCP:REP 382->621|2axtC1|3e-18|7.0|230/447|f.55.1.1| RP:SCP:REP 638->779|1w25A3|6e-30|30.3|142/162|d.58.29.2| RP:SCP:REP 753->946|1dgjA4|5e-40|14.4|188/596|d.133.1.1| HM:SCP:REP 373->500|1p97A_|4.2e-13|32.7|113/0|d.110.3.7|1/2|PYP-like sensor domain (PAS domain)| HM:SCP:REP 494->620|1ew0A_|9.7e-26|31.7|126/130|d.110.3.2|2/2|PYP-like sensor domain (PAS domain)| HM:SCP:REP 638->787|1w25A3|7.9e-41|34.7|150/0|d.58.29.2|1/1|Nucleotide cyclase| HM:SCP:REP 776->968|1xx7A_|6e-37|36.3|168/0|a.211.1.1|1/1|HD-domain/PDEase-like| OP:NHOMO 9902 OP:NHOMOORG 673 OP:PATTERN -----------------------33--1-1-1--2--------FF-4J21G78--------------- JL46D---111---15311-1F33-111111-A5556B76BBAQX-------545-----974-E4J7764----1----D188DN69-------------------22----------------111121221C1FGGFE424E7gVWJMM356FF---1--6JA-EEJ7------------UAA95FF3AG299999779299A999143333AA9798F4II333333JL-1111111111111111111---1--1----2211----1-1------------------------------------------------9MDGXABAAADBBCE8KAAA465E6D--AHGGJTSMLGQ9GKF99AC5--G8E6882-1--128cTVA7FVPLRV4699489789J-aYQVXFPXAS51KRRPXVOXbYHGPC899291AB78784--------BBB4-uDS11111111111111111111111-11111-77D93B8842IFHHJHC9998DDQXAAAA49JSNCPEO-5QQKfIZMOW12uA7VSZUMgchK-------37IRp*6UdQVObZF*hZZZ1aaeqSYccg8A98FBHIK655----------------VFMPD32oeIfeapKnVossrspotdusscpkbac*x---DbHk------CGIB3L7CBBBCBBBD9-9BBCB79ABAAAAABCAADEHDCF--18489888888788897C5773258--E34444433444---W-2-2-GHGGG9pEl---------------9899949-1-GbUTSTWbaZaYUWVPTUV-----2---aQTTNccbbaTXYxwLNJOJOMEFF2222--n4DD88EE---1-112B47-------------------------KJ4MLEJHFG-3- ----1------------------------------------------------------------------------------------------1-------------3------------------------------------------------3----3---------52----------1--8-----7---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 749 STR:RPRED 77.1 SQ:SECSTR #################################################################cGGTcccTTccccccccccccTTEETcEEccccEEccccTTcEEEEEEcccEEccccEEEEEEEEEEcc##################################################################################################################################################ETTEEEEEcTTTEEEE#cHHHHHHHHHHHHHHHHT#TcTTcccTTTTcccHHHHHHHHHHHHHHHHHHHHc#####HHHHHHHHHHHHHHHHcccccccHHHHHGGGGGccccccccGGGGcccHHHHHHHHHHHHHHHHHHHHHHHHHHTcccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccTTTcHHHTTcccHHHHHHHHHHHccHHHHTTccTTcccEEcTTEEEEEEcTTccEEEEcccTTTHHHHHHHHHHHHcHHHHHHHTTccHHHHHHHHHHHHHHcTTccccTEcTTccEEEEEEcccGGGTTcccHHHHHHHHHHTcccHHHHHHHHHHHHHHHHHHTTccTTTTcccccTTccccTTHHHHHHHHTccEEEEEccccHHHHHHHHHHTTcEEEEEcTTcccHHHHHHHHHTccTTTGGGEEEEEccccccHHHGGGccTTTcccccccEEEEcTTTccHHHHHHHHHTTcEEEEHHHHHHHHHHHHHHHGGGccccccccGHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHTTccccHHHHHHHHHHHTTccHHHHHHHHHHHHHHccHHHTTccccHHHHHHHHHHHHTTcHHHHHHHHHHHHTTTTcccccccccccHHHHHHHTHHHHHHHcccHHHHHTTHHHHHHHHHHHHHHH#### DISOP:02AL 1-5,969-972| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHcccccccEEEEEEcccccEEEEEEEcccccccccccHHHHHHHHccccccccccccccEEEEEEEccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHccccEEEEEccccEEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHcccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccccEEEEcHHHHHHHcccHHHHccccHHHHcccccHHHHHHHHHHHccccHHHHHHHHHHHccccEEEEEEEEEEEEcccEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEccccEEEEEcHHHHHHHcccHHHHccccHHHHcccccHHHHHHHHHHHHHHccEEEEEEEEEcccccEEEEEEEEEEEEEcccEEEEEEEEEEcHHHHHHHHHHHHHcccHHHHccHHHHHHHHHHHHHHHcccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHccEEcccEEEEEEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccEEEccHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHcccc //