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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50183.1
DDBJ      :             NADH dehydrogenase (quinone)
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  560/915 : Eukaryota  169/199 : Viruses  0/175   --->[See Alignment]
a.29.12c.142.1c.47.1d.15.13d.58.1
:627 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   35->123 1m2aB PDBj 6e-07 35.4 %
:BLT:PDB   144->560 3i9v1 PDBj 3e-87 40.0 %
:BLT:PDB   549->624 1hfeL PDBj 2e-10 38.4 %
:RPS:PDB   24->110 2auvA PDBj 2e-11 25.6 %
:RPS:PDB   573->626 1durA PDBj 4e-11 28.8 %
:RPS:SCOP  24->124 1f37A  c.47.1.11 * 6e-14 31.9 %
:RPS:SCOP  144->380 2fug12  c.142.1.1 * 1e-77 43.9 %
:RPS:SCOP  382->465 2fug13  d.15.13.1 * 1e-20 34.1 %
:RPS:SCOP  467->566 2fug11  a.29.12.1 * 7e-15 33.3 %
:RPS:SCOP  573->627 1jnrB  d.58.1.5 * 2e-12 40.0 %
:HMM:SCOP  22->132 1f37A_ c.47.1.11 * 2.5e-20 34.7 %
:HMM:SCOP  139->381 2fug12 c.142.1.1 * 4.3e-96 52.7 %
:HMM:SCOP  382->465 2fug13 d.15.13.1 * 1e-24 54.9 %
:HMM:SCOP  466->569 2fug11 a.29.12.1 * 2.8e-40 56.7 %
:HMM:SCOP  561->626 2fug91 d.58.1.5 * 1e-18 43.9 %
:RPS:PFM   24->109 PF01257 * Complex1_24kDa 4e-05 39.2 %
:RPS:PFM   109->165 PF05091 * eIF-3_zeta 9e-04 39.6 %
:RPS:PFM   207->359 PF01512 * Complex1_51K 3e-44 57.7 %
:RPS:PFM   471->511 PF10589 * NADH_4Fe-4S 2e-09 53.7 %
:HMM:PFM   189->359 PF01512 * Complex1_51K 1e-52 48.3 149/151  
:HMM:PFM   470->515 PF10589 * NADH_4Fe-4S 6.2e-21 50.0 46/46  
:HMM:PFM   572->595 PF00037 * Fer4 7e-10 54.2 24/24  
:HMM:PFM   603->625 PF00037 * Fer4 2e-07 52.2 23/24  
:HMM:PFM   385->433 PF10531 * SLBB 1.1e-09 36.7 49/59  
:HMM:PFM   24->110 PF01257 * Complex1_24kDa 4e-07 28.2 78/145  
:BLT:SWISS 24->122 FER2_CLOPA 2e-09 35.4 %
:BLT:SWISS 146->562 NUOF2_RHIME 5e-97 41.7 %
:BLT:SWISS 570->619 RNFB_MAGSM 3e-10 48.0 %
:PROS 579->590|PS00198|4FE4S_FER_1
:PROS 483->494|PS00645|COMPLEX1_51K_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50183.1 GT:GENE ABO50183.1 GT:PRODUCT NADH dehydrogenase (quinone) GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(1812550..1814433) GB:FROM 1812550 GB:TO 1814433 GB:DIRECTION - GB:PRODUCT NADH dehydrogenase (quinone) GB:NOTE PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit KEGG: chy:CHY_0732 Fe-hydrogenase, beta subunit GB:PROTEIN_ID ABO50183.1 GB:DB_XREF GI:134052212 InterPro:IPR001450 InterPro:IPR001949 InterPro:IPR011538 LENGTH 627 SQ:AASEQ MLIKSHDDLKQLRQKVKAALDQEKMRILVCAGTGCVANGSLKVYAALKRMIEEKGLLTSVELVEEVSHEGIAVNISGCHGFCQMGPLVRFEPSGLLYCKVKEEDAEEIVNTTVLNNGIVERLLYEDPNTGEKIKTQDENPFYKRQERVTLRYCGRIDPDDIYDYIAHRGYRAISKILQEMNPEEVIKEVNDSGLRGRGGGGFPTGRKWSFAASQPGPKKYIICNGDEGDPGAFMDRSVMEGNPHSVLEGMMIAGYAIGANEGYIYARAEYPLAIKRMRKAIADAEAHGLLGNNILGSDFNFKINIKEGAGAFVCGEETALIASIEGERGMPRPRPPFPAVKGLWGCPTIINNVETLANLRYIINNGAGEFKKYGTAGSSGTKTFALAGQVQNTGLVEVPMGVTLREVVFDIGGGLRDGKKYKSVQIGGPSGGCLTEDKLDLPLDYDELMKVGAMIGSGGLVVMGDDTCMVETAKFFMGFVQNESCGKCVPCREGTKQLLALLTKITEGKGTEADLDLLEELAQNVKDGSLCGLGKTAPNPVLTTLRYFRDEYIAHVRDKKCPAGACQALKEYYINPEKCKGCTVCSRVCPAGAITGEKKQPHVINVDLCLKCGACMEKCKFGSIEIR GT:EXON 1|1-627:0| BL:SWS:NREP 3 BL:SWS:REP 24->122|FER2_CLOPA|2e-09|35.4|96/102| BL:SWS:REP 146->562|NUOF2_RHIME|5e-97|41.7|417/421| BL:SWS:REP 570->619|RNFB_MAGSM|3e-10|48.0|50/181| PROS 579->590|PS00198|4FE4S_FER_1|PDOC00176| PROS 483->494|PS00645|COMPLEX1_51K_2|PDOC00555| SEG 193->206|glrgrggggfptgr| SEG 331->338|prprppfp| SEG 512->522|eadldlleela| BL:PDB:NREP 3 BL:PDB:REP 35->123|1m2aB|6e-07|35.4|79/101| BL:PDB:REP 144->560|3i9v1|3e-87|40.0|415/437| BL:PDB:REP 549->624|1hfeL|2e-10|38.4|73/396| RP:PDB:NREP 2 RP:PDB:REP 24->110|2auvA|2e-11|25.6|78/85| RP:PDB:REP 573->626|1durA|4e-11|28.8|52/55| RP:PFM:NREP 4 RP:PFM:REP 24->109|PF01257|4e-05|39.2|74/142|Complex1_24kDa| RP:PFM:REP 109->165|PF05091|9e-04|39.6|53/505|eIF-3_zeta| RP:PFM:REP 207->359|PF01512|3e-44|57.7|142/162|Complex1_51K| RP:PFM:REP 471->511|PF10589|2e-09|53.7|41/46|NADH_4Fe-4S| HM:PFM:NREP 6 HM:PFM:REP 189->359|PF01512|1e-52|48.3|149/151|Complex1_51K| HM:PFM:REP 470->515|PF10589|6.2e-21|50.0|46/46|NADH_4Fe-4S| HM:PFM:REP 572->595|PF00037|7e-10|54.2|24/24|Fer4| HM:PFM:REP 603->625|PF00037|2e-07|52.2|23/24|Fer4| HM:PFM:REP 385->433|PF10531|1.1e-09|36.7|49/59|SLBB| HM:PFM:REP 24->110|PF01257|4e-07|28.2|78/145|Complex1_24kDa| GO:PFM:NREP 9 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF01257|IPR002023| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF01257|IPR002023| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01257|IPR002023| GO:PFM GO:0003743|"GO:translation initiation factor activity"|PF05091|IPR007783| GO:PFM GO:0006413|"GO:translational initiation"|PF05091|IPR007783| GO:PFM GO:0010181|"GO:FMN binding"|PF01512|IPR011538| GO:PFM GO:0016651|"GO:oxidoreductase activity, acting on NADH or NADPH"|PF01512|IPR011538| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF01512|IPR011538| GO:PFM GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|PF01512|IPR011538| RP:SCP:NREP 5 RP:SCP:REP 24->124|1f37A|6e-14|31.9|91/109|c.47.1.11| RP:SCP:REP 144->380|2fug12|1e-77|43.9|237/243|c.142.1.1| RP:SCP:REP 382->465|2fug13|1e-20|34.1|82/84|d.15.13.1| RP:SCP:REP 467->566|2fug11|7e-15|33.3|99/105|a.29.12.1| RP:SCP:REP 573->627|1jnrB|2e-12|40.0|55/149|d.58.1.5| HM:SCP:REP 22->132|1f37A_|2.5e-20|34.7|101/109|c.47.1.11|1/1|Thioredoxin-like| HM:SCP:REP 139->381|2fug12|4.3e-96|52.7|243/0|c.142.1.1|1/1|Nqo1 FMN-binding domain-like| HM:SCP:REP 382->465|2fug13|1e-24|54.9|82/0|d.15.13.1|1/1|Nqo1 middle domain-like| HM:SCP:REP 466->569|2fug11|2.8e-40|56.7|104/0|a.29.12.1|1/1|Nqo1C-terminal domain-like| HM:SCP:REP 561->626|2fug91|1e-18|43.9|66/0|d.58.1.5|1/1|4Fe-4S ferredoxins| OP:NHOMO 1128 OP:NHOMOORG 737 OP:PATTERN ------------------------1---11----1---------1--1----------1-2------- 11222---------12211-12--23111111322211111221-1--1-----1-----11211123411--------112-11112--1--1-----1-11--21111--------------1-----1---1-22222333111111111--11------11--11--------------11111331--------------------------------------------------------------1---------------------------------------------------------------------154-3111111121323111---3-2114--23113436431311121--32-111111111233221133333311111111111-33333433221122223332223333112222333322311111111322-23111111111111111111111111111111121221-22112222222222222222222222223344422331331222223323321222131111111113232133-2-1--3-----444253385111111941--1----------------1--1111112---2---1-------111---2----21--221111111111111111111111111-1111111111111111111111111111111111111111111111111111-11111111111111111111111114-121---1-1---------11111111111-1111221122222-1111111111111--------------111111111111111112111111--------1---------------------------3223333333221 ----111-211-11111111111111111121111111121111111111111111111111111----1--211------1111111-12111111111111112-1-1115221-111-111111113B1-112--1111111-111-11-11-11111111111411311111111H1112121341111131111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 579 STR:RPRED 92.3 SQ:SECSTR #######################cccEEccccHHHHTTTHHHHHHHHHHHHccccccccccEEEE###ccccccccccccccTTccccEEEEGGGccccccccHHHHHHHHTTTTccccGGGE####################ccccccTTcTTcTTTTcHHHHHHTTcTHHHHHHHHcccHHHHHHHHHTTTcccTTTTcccHHHHHTTcccccccccEEEEEcccccTTcccHHHHHHHcHHHHHHHHHHHHHHHTccEEEEEEcTTcHHHHHHHHHHHHHHHHTTcccTTGGGcccccEEEEEEccccGGGGcHHHHHHHHTTcccccccccccTTTccGGGccEEEEEHHHHHTHHHHHHccHHHHHTccccccccEEEEEEEccccccEEEEEETTccHHHHHHTTTccccc##cEEEEEccccccccEcHHHHTccccTTTTGGGcccccccEEEEEETTccHHHHHHHHHHHHHHHcccccHHHHTTTTTHHHHHHHHTTTcccHHHHHHHHHHHHHHTTccccTHccccHHHHHHHHHHHHHHHHHHHHTHHcTTccEccEEEEEEEcTTcccccccGGGcTTccEEccccEEcEEcTTTcccccHHHHHcTTccEEEc DISOP:02AL 1-3,17-18,129-131| PSIPRED cccccHHHHHHHHHHHHHcccccccEEEEEccHHHHHccHHHHHHHHHHHHHHccccccEEEEcccccccEEEEEcccccccccccEEEEEcccEEEccccHHHHHHHHHHHHHccccccHHcccccccccccccccccccccccccHHHHHccccccccHHHHHHHcccHHHHHHHHcccHHHHHHHHHHccccccccccccHHHHHHHcccccccccEEEEEcccccccccHHHHHHHHcHHHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccccHHHHHHHHHHccccccccccccccccccccccEEEccHHHHHHHHHHHHccHHHHHHHccccccccEEEEEEcccccccEEEEEccccHHHHHHHHcccccccccEEEEEEcccccccccHHHccccEEcccHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHcccccccccccccccHHHHccccHHHccccccHHHHcccccEEEEccEEEEEcHHHcccccccHHHcccccEEcc //