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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50201.1
DDBJ      :             ribosomal large subunit pseudouridine synthase D
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  903/915 : Eukaryota  185/199 : Viruses  0/175   --->[See Alignment]
d.265.1d.66.1
:306 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   16->302 2istA PDBj 1e-51 46.0 %
:RPS:PDB   4->230 3dpuB PDBj 5e-39 10.0 %
:RPS:SCOP  13->104 1dm9A  d.66.1.3 * 3e-18 13.0 %
:RPS:SCOP  82->305 1v9kA  d.265.1.3 * 3e-62 35.9 %
:HMM:SCOP  16->115 1c06A_ d.66.1.2 * 1.1e-17 28.3 %
:HMM:SCOP  71->302 1przA_ d.265.1.3 * 2e-76 45.4 %
:RPS:PFM   89->242 PF00849 * PseudoU_synth_2 2e-31 52.4 %
:HMM:PFM   88->242 PF00849 * PseudoU_synth_2 4.1e-40 36.2 152/164  
:HMM:PFM   16->61 PF01479 * S4 1.8e-12 37.0 46/48  
:BLT:SWISS 16->302 YLYB_BACSU 2e-99 61.4 %
:PROS 134->148|PS01129|PSI_RLU

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50201.1 GT:GENE ABO50201.1 GT:PRODUCT ribosomal large subunit pseudouridine synthase D GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 1828578..1829498 GB:FROM 1828578 GB:TO 1829498 GB:DIRECTION + GB:PRODUCT ribosomal large subunit pseudouridine synthase D GB:NOTE KEGG: gka:GK1146 ribosomal large subunit pseudouridine synthase D TIGRFAM: pseudouridine synthase, RluA family PFAM: RNA-binding S4 domain protein; pseudouridine synthase GB:PROTEIN_ID ABO50201.1 GB:DB_XREF GI:134052230 InterPro:IPR002942 InterPro:IPR006145 InterPro:IPR006224 InterPro:IPR006225 LENGTH 306 SQ:AASEQ MESYTYIVDGENAKCRLDVFLANQCQDISRSYIQKLIEDGLVTVDGKPARANHKLRVEETIHMQIPPAEELKVEPENIPLDIYYEDSHVIVVNKPRGMVVHPAEGNIAGTLVNALLYHCHDLSGINGIMRPGIVHRLDKDTSGLIMAAKHDQAHQSLARQLKDRTVTRRYQALVHHNIKGDFGTINAPIGRDPRDRQKMAVVERNSKNAVTHFQVLERFGDYTLIECRLETGRTHQIRVHMAYIGFPLVGDPKYGPSKSHFHLDGQLLHAKVLGFLHPVSGEYLEFIAPLPDVFENVLVKLRGAKN GT:EXON 1|1-306:0| BL:SWS:NREP 1 BL:SWS:REP 16->302|YLYB_BACSU|2e-99|61.4|285/303| PROS 134->148|PS01129|PSI_RLU|PDOC00869| BL:PDB:NREP 1 BL:PDB:REP 16->302|2istA|1e-51|46.0|278/321| RP:PDB:NREP 1 RP:PDB:REP 4->230|3dpuB|5e-39|10.0|210/328| RP:PFM:NREP 1 RP:PFM:REP 89->242|PF00849|2e-31|52.4|145/149|PseudoU_synth_2| HM:PFM:NREP 2 HM:PFM:REP 88->242|PF00849|4.1e-40|36.2|152/164|PseudoU_synth_2| HM:PFM:REP 16->61|PF01479|1.8e-12|37.0|46/48|S4| GO:PFM:NREP 4 GO:PFM GO:0001522|"GO:pseudouridine synthesis"|PF00849|IPR006145| GO:PFM GO:0003723|"GO:RNA binding"|PF00849|IPR006145| GO:PFM GO:0009451|"GO:RNA modification"|PF00849|IPR006145| GO:PFM GO:0009982|"GO:pseudouridine synthase activity"|PF00849|IPR006145| RP:SCP:NREP 2 RP:SCP:REP 13->104|1dm9A|3e-18|13.0|92/104|d.66.1.3| RP:SCP:REP 82->305|1v9kA|3e-62|35.9|217/227|d.265.1.3| HM:SCP:REP 16->115|1c06A_|1.1e-17|28.3|99/159|d.66.1.2|1/1|Alpha-L RNA-binding motif| HM:SCP:REP 71->302|1przA_|2e-76|45.4|227/252|d.265.1.3|1/1|Pseudouridine synthase| OP:NHOMO 3116 OP:NHOMOORG 1093 OP:PATTERN --------------------------------------11111------------------------- 2121132222231222223-41112222222221113333111111321111222211111112212222111221112111111222444414-311122223234424-2222222-211114111111111112222211131223233311223333323212222113111113111133311221433-3333333333333322333333333333223333334533333333333333333333-34344343334444444443333333333333333333333333333333333333333334333333332333333333333343333333334332342133141121212223133214333322222333333333333322222222223-323333332232233222222222334433333333333333333333333334222222222331122222222222222122233333222222223222222222222222222222222232225342444444344332224434444442222548142437223422113343444347677972433333333332333333333433332266654474774689999A977799-A999A2-3233322222244444554444444444-44444444444444444445554444544444444444444445444444431544444444444222422222222233635555455454554335555455534446444444434-44444442222222226777566666667665534344333222222443333332223222252211112-22222222221222122222222222222232 ----221-512122311111111111-111111-1-1111111111111111111111111122222211332222322322222211-2221232111112121-12936243333-212131331214B3-32312114233213112332331123-12332214114-1221435F8681364671659862216 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 302 STR:RPRED 98.7 SQ:SECSTR ###EEcHHHHHHHHHHHHTcGGGTTcEEEGGGHHHHHHTccGGGcccHHHHHHHHHHHHHTTccEEccccEEEccccccEEEEEEEccccTTHHHHHHHHHGccccTTGGEEEEEEETccEEHHHTTccTEEEEEEGGGTTEEEEEEEETTTTEEEEEEEccHHHHHHHHHHHHHHTcTTccEEEEEEETTEEEEHHHHHHHHHTTccEEEETTTTEEEEHHHHHHTTcccccTTHHHHHHHHTTccEEEEEEEEEEEEEEEETTEEcTTccTTcEEEccHHHHHHHHHTccccccccTTccTTc# DISOP:02AL 1-1,304-307| PSIPRED ccEEEEEEcHHHccccHHHHHHHHcccccHHHHHHHHHcccEEEccEEcccccccccccEEEEEEcccccccccccccccEEEEEcccEEEEEccccEEEEcccccccccHHHHHHHHHHHcccccccccEEEEEEccccccEEEEEEccHHHHHHHHHHHHHccccEEEEEEEEccccccEEEEEcccEEcccccEEEEEEcccccccccEEEEEEEcccEEEEEEEEcccccHHHHHHHHHccccEEccccccccccccccccHHEEEEEEEEEccccccEEEEEccccHHHHHHHHHHHcccc //