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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50472.1
DDBJ      :             tRNA pseudouridine synthase B
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  884/915 : Eukaryota  192/199 : Viruses  0/175   --->[See Alignment]
d.265.1
:310 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->277 1k8wA PDBj 4e-44 35.3 %
:RPS:PDB   2->308 2ab4A PDBj 1e-43 33.4 %
:RPS:SCOP  1->231 1k8wA5  d.265.1.2 * 2e-47 35.7 %
:HMM:SCOP  1->237 1k8wA5 d.265.1.2 * 1.9e-74 45.0 %
:RPS:PFM   23->176 PF01509 * TruB_N 5e-39 51.0 %
:HMM:PFM   23->176 PF01509 * TruB_N 2e-56 48.3 149/149  
:HMM:PFM   2->19 PF08068 * DKCLD 3.3e-05 61.1 18/59  
:HMM:PFM   241->263 PF01472 * PUA 0.00053 43.5 23/74  
:BLT:SWISS 1->241 TRUB_PELTS 4e-68 51.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50472.1 GT:GENE ABO50472.1 GT:PRODUCT tRNA pseudouridine synthase B GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(2144641..2145573) GB:FROM 2144641 GB:TO 2145573 GB:DIRECTION - GB:PRODUCT tRNA pseudouridine synthase B GB:NOTE KEGG: sth:STH1525 tRNA pseudouridine 55 synthase TIGRFAM: tRNA pseudouridine synthase B PFAM: pseudouridylate synthase TruB domain protein GB:PROTEIN_ID ABO50472.1 GB:DB_XREF GI:134052501 InterPro:IPR002501 InterPro:IPR004510 LENGTH 310 SQ:AASEQ MDGVINILKPPGMTSHDVVFFVRRVTGVKKCGHTGTLDPGASGVLPVCVGKATRLARFVTDGDKTYRAEITLGIETSSQDAFGNVISRIDASAIKLDDFSSELRKFQGEIKQTPPMASAIKVKGKKLYELEREGIIVDVPTRTVTIYQVNIVDSWDWGTPNPRVLFDVACSKGTYVRTLCSDIGKELGCGAYMSFLLRSRVAAFGLHNAYTLEEIAALADKSQLESAVIPMAKAVQHLPIVEIHPSAQKSVCSGATLYPAGVRVGLEYLKPEGLVQVQLNHELLGIYKPVLDVNDFGERIILRPEVVFAS GT:EXON 1|1-310:0| BL:SWS:NREP 1 BL:SWS:REP 1->241|TRUB_PELTS|4e-68|51.0|241/316| BL:PDB:NREP 1 BL:PDB:REP 1->277|1k8wA|4e-44|35.3|269/304| RP:PDB:NREP 1 RP:PDB:REP 2->308|2ab4A|1e-43|33.4|287/300| RP:PFM:NREP 1 RP:PFM:REP 23->176|PF01509|5e-39|51.0|149/149|TruB_N| HM:PFM:NREP 3 HM:PFM:REP 23->176|PF01509|2e-56|48.3|149/149|TruB_N| HM:PFM:REP 2->19|PF08068|3.3e-05|61.1|18/59|DKCLD| HM:PFM:REP 241->263|PF01472|0.00053|43.5|23/74|PUA| GO:PFM:NREP 1 GO:PFM GO:0006396|"GO:RNA processing"|PF01509|IPR002501| RP:SCP:NREP 1 RP:SCP:REP 1->231|1k8wA5|2e-47|35.7|224/242|d.265.1.2| HM:SCP:REP 1->237|1k8wA5|1.9e-74|45.0|231/242|d.265.1.2|1/1|Pseudouridine synthase| OP:NHOMO 1371 OP:NHOMOORG 1144 OP:PATTERN 11111111111111111111111111111111111111111111111111111111111111111111 1111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111-11--111111111-1-1111111-111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111-11111111111111111111111111111111111111111111111111111111111111111111---1-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111-1-------1111111111111111111111111111111-111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111-1111111-111111-111111-111111111111111111 2111122-51111111233222222222222222212222222222222222221121222222222212222222212222222222-2222222222212221312412231-232221222311227F2-42422-142222221213-122232213421121511-11212232H2222234443222222223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 308 STR:RPRED 99.4 SQ:SECSTR ccEEEEEEEcccccHHHHHHHHHHHTTcccEEEcccccTTcEEEEEEEEGGGGGGGGGGTTccEEEEEEEEETEEETTccTTccEEEEccccccHcHHHHHHHHTTcEEEEEccccccccccccccHHHHHHTTcccccccEEEEEEEEEEEEEEEEEEETTEEEEEEEEcTTccHHHHHHHHHHHHTccEEEEEEEEEEETTEETTTcccTTTcHTcccHHHHHHHcEEGGGccTTccEEEEcTTTHHHHTTcccEETTTccccccTcccccEEEEcTTccEEEEEETccEEEEEcccccccccEEE## DISOP:02AL 310-311| PSIPRED ccEEEEEEccccccHHHHHHHHHHHHccccEEcccccccHHcccEEEEEcccHHHHHHHHcccEEEEEEEEEEEEEccccccccEEEEEccccccHHHHHHHHHHHcccEEEccccEEEEEEccHHHHHHHHcccEEEccccEEEEEEEEEEEEccccccccEEEEEEEEccccHHHHHHHHHHHHccccEEEEEEEEEEEccccHHHcccHHHHHHHHHHHHHHHHcccHHHHHHcccEEEEcHHHHHHHHcccEEcccccHHHHcccccccEEEEEccccEEEEEEEcccHHHcccccEEEEEEEEcc //