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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50521.1
DDBJ      :             Ku domain protein
Swiss-Prot:             

Homologs  Archaea  1/68 : Bacteria  216/915 : Eukaryota  1/199 : Viruses  2/175   --->[See Alignment]
b.131.1
:280 amino acids
:PSIPRED
:DISOPRED
:RPS:SCOP  2->259 1jeqA3  b.131.1.1 * 7e-39 12.6 %
:HMM:SCOP  1->259 1jeyB1 b.131.1.2 * 8.4e-53 31.8 %
:RPS:PFM   10->190 PF02735 * Ku 8e-17 36.9 %
:HMM:PFM   9->192 PF02735 * Ku 5.1e-35 25.7 183/201  
:BLT:SWISS 55->228 KU70_NEUCR 5e-05 22.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50521.1 GT:GENE ABO50521.1 GT:PRODUCT Ku domain protein GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(2201638..2202480) GB:FROM 2201638 GB:TO 2202480 GB:DIRECTION - GB:PRODUCT Ku domain protein GB:NOTE PFAM: Ku domain protein KEGG: mta:Moth_1489 Ku GB:PROTEIN_ID ABO50521.1 GB:DB_XREF GI:134052550 InterPro:IPR006164 LENGTH 280 SQ:AASEQ MRPLWKGAVSFGLVYVPVKMYAATEKKSIKFNYLHDKCKTPIQYRRYCPYCNTEINNEEIVKGYEYEKGKYVVMKDEDFENLPGEKTKSINIVDFVDLTDIDPLYFDKGYYLAPGEGGQKVYELLKRSMQETGKVAVAKVIIRDKESLAALRVADGVLTINTMFYPDEVRKPSGIPELDYEIELHENELKMAVNLINNLSAPFKPEKYTDEYRQQLLEVIQAKIAGEEVEAVPAVQTDKVVDLMSALKASIDLAKQERDNALKKDATKKKTTRTKKATAS GT:EXON 1|1-280:0| BL:SWS:NREP 1 BL:SWS:REP 55->228|KU70_NEUCR|5e-05|22.0|173/645| SEG 263->279|kkdatkkkttrtkkata| RP:PFM:NREP 1 RP:PFM:REP 10->190|PF02735|8e-17|36.9|176/196|Ku| HM:PFM:NREP 1 HM:PFM:REP 9->192|PF02735|5.1e-35|25.7|183/201|Ku| GO:PFM:NREP 3 GO:PFM GO:0003677|"GO:DNA binding"|PF02735|IPR006164| GO:PFM GO:0004003|"GO:ATP-dependent DNA helicase activity"|PF02735|IPR006164| GO:PFM GO:0006303|"GO:double-strand break repair via nonhomologous end joining"|PF02735|IPR006164| RP:SCP:NREP 1 RP:SCP:REP 2->259|1jeqA3|7e-39|12.6|253/285|b.131.1.1| HM:SCP:REP 1->259|1jeyB1|8.4e-53|31.8|258/304|b.131.1.2|1/1|SPOC domain-like| OP:NHOMO 296 OP:NHOMOORG 220 OP:PATTERN -----------------------1-------------------------------------------- 112-2---------11111-11--1111111111111111-1111111-111111-----111-113242----------1------------------1-1-1-111-1---------------------------------------------------------------------------------1-111111111-11111111111111----11--------11---------------------------------------------------------------------------------------------------------1-------1----1--1111-111111111--------1--1-----2242341122222----------2---------241--3324644643422------2222------------22-----------------------------------111---11-1111-111----11121111---21221---11---111111-1----1--1-----------1-1-1--------------111---2--1121-1---------------------------------------------------------------------------------------------------------------------------------------------------------------11111------------------------------------11111-11111111111------------------------1111111----------------------------------------------------------------1- -------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- -----------------------------------------------------------------------------------------------1------1------------------------------------------------------------------------ DISOP:02AL 222-239,247-281| PSIPRED ccccEEEEEEEEEEEEEEEEEEccccccccHHHccccccccEEEEEEcccccccccHHHEEEEEEcccccEEEEcHHHHHHccccccccEEEEEEEEHHHccHHHccccEEEEcccccHHHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEccEEEEEEcccHHHHccHHHcccccccccccHHHHHHHHHHHHHHcccccHHHcccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccccccHHHcccccccccc //