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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50573.1
DDBJ      :             signal recognition particle subunit FFH/SRP54 (srp54)
Swiss-Prot:             

Homologs  Archaea  67/68 : Bacteria  904/915 : Eukaryota  195/199 : Viruses  0/175   --->[See Alignment]
a.24.13a.36.1c.37.1e.28.1
:446 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->428 2j289 PDBj e-126 52.5 %
:RPS:PDB   1->431 3dm5A PDBj 8e-52 38.0 %
:RPS:SCOP  6->192 1uf2A  e.28.1.2 * 1e-36 14.1 %
:RPS:SCOP  296->428 1qzwA2  a.36.1.1 * 5e-42 30.8 %
:HMM:SCOP  1->94 1wgwA_ a.24.13.1 * 1.9e-27 48.9 %
:HMM:SCOP  92->296 1ls1A2 c.37.1.10 * 4.9e-58 42.4 %
:HMM:SCOP  296->429 1qzxA2 a.36.1.1 * 1.1e-48 58.2 %
:RPS:PFM   14->82 PF02881 * SRP54_N 4e-06 47.7 %
:RPS:PFM   100->293 PF00448 * SRP54 1e-56 55.7 %
:RPS:PFM   326->425 PF02978 * SRP_SPB 2e-27 64.0 %
:HMM:PFM   100->294 PF00448 * SRP54 1.1e-79 51.3 195/196  
:HMM:PFM   325->425 PF02978 * SRP_SPB 6.3e-39 55.4 101/104  
:HMM:PFM   5->82 PF02881 * SRP54_N 3.7e-21 38.7 75/75  
:BLT:SWISS 2->432 SRP54_BACSU e-150 61.4 %
:PROS 267->280|PS00300|SRP54
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50573.1 GT:GENE ABO50573.1 GT:PRODUCT signal recognition particle subunit FFH/SRP54 (srp54) GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(2251096..2252436) GB:FROM 2251096 GB:TO 2252436 GB:DIRECTION - GB:PRODUCT signal recognition particle subunit FFH/SRP54 (srp54) GB:NOTE KEGG: dsy:DSY2599 hypothetical protein TIGRFAM: signal recognition particle protein PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle SMART: AAA ATPase GB:PROTEIN_ID ABO50573.1 GB:DB_XREF GI:134052602 InterPro:IPR000897 InterPro:IPR003593 InterPro:IPR004125 InterPro:IPR004780 InterPro:IPR013822 LENGTH 446 SQ:AASEQ MFKGLGERLDEIFKSLKGKGRLTEDDVNHAMREVKMALLEADVNFKVVKEFVAQVKGRAVGQDVLESLSPAQQVIKIVRDELTELLGGTQAKINLSPKPPTIIMLVGLQGAGKTTTAGKLAKLLSKQGRRPLMVAGDIYRPAAIKQLQVLGDQLNIPVFSMGQENPVKIAQSAVEQANSTGRDLVIIDTAGRLHINEELMDELANIKSTVRPHEILLVVDAMTGQEAVNVADTFNQKLGLDGIVMTKLDGDARGGAALSVRKVTGTPIKFAGMGEKLDALEPFYPDRMADRILGMGDVLTLIEKAQANFDAEQAAKLNKKIRQADFNLEDFLEQMQQVKKLGPLEQVLGMIPGMGKLTKQLKDQQLDGKELAQVEAIIYSMTVWERHHPEKIDGSRKKRIARGSGTRVQDVNQLLKQFEQTRKMMKQISNMTKGGKKGKMKLPFFQ GT:EXON 1|1-446:0| BL:SWS:NREP 1 BL:SWS:REP 2->432|SRP54_BACSU|e-150|61.4|430/446| PROS 267->280|PS00300|SRP54|PDOC00272| COIL:NAA 31 COIL:NSEG 1 COIL:REGION 311->341| SEG 433->441|kggkkgkmk| BL:PDB:NREP 1 BL:PDB:REP 2->428|2j289|e-126|52.5|425/430| RP:PDB:NREP 1 RP:PDB:REP 1->431|3dm5A|8e-52|38.0|410/416| RP:PFM:NREP 3 RP:PFM:REP 14->82|PF02881|4e-06|47.7|65/74|SRP54_N| RP:PFM:REP 100->293|PF00448|1e-56|55.7|194/196|SRP54| RP:PFM:REP 326->425|PF02978|2e-27|64.0|100/101|SRP_SPB| HM:PFM:NREP 3 HM:PFM:REP 100->294|PF00448|1.1e-79|51.3|195/196|SRP54| HM:PFM:REP 325->425|PF02978|6.3e-39|55.4|101/104|SRP_SPB| HM:PFM:REP 5->82|PF02881|3.7e-21|38.7|75/75|SRP54_N| GO:PFM:NREP 8 GO:PFM GO:0005515|"GO:protein binding"|PF02881|IPR013822| GO:PFM GO:0005525|"GO:GTP binding"|PF02881|IPR013822| GO:PFM GO:0006614|"GO:SRP-dependent cotranslational protein targeting to membrane"|PF02881|IPR013822| GO:PFM GO:0005525|"GO:GTP binding"|PF00448|IPR000897| GO:PFM GO:0006614|"GO:SRP-dependent cotranslational protein targeting to membrane"|PF00448|IPR000897| GO:PFM GO:0006614|"GO:SRP-dependent cotranslational protein targeting to membrane"|PF02978|IPR004125| GO:PFM GO:0008312|"GO:7S RNA binding"|PF02978|IPR004125| GO:PFM GO:0048500|"GO:signal recognition particle"|PF02978|IPR004125| RP:SCP:NREP 2 RP:SCP:REP 6->192|1uf2A|1e-36|14.1|185/967|e.28.1.2| RP:SCP:REP 296->428|1qzwA2|5e-42|30.8|133/138|a.36.1.1| HM:SCP:REP 1->94|1wgwA_|1.9e-27|48.9|94/0|a.24.13.1|1/1|Domain of the SRP/SRP receptor G-proteins| HM:SCP:REP 92->296|1ls1A2|4.9e-58|42.4|205/0|c.37.1.10|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 296->429|1qzxA2|1.1e-48|58.2|134/138|a.36.1.1|1/1|Signal peptide-binding domain|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s44444569D2664432224 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 431 STR:RPRED 96.6 SQ:SECSTR ccTHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHHccccTTccHHHHHHHHHHHHHHHHTTcccccccccccccEEEEEEccTTccHHHHHHHHHHHHHTTTccEEEEEcccccTHHHHHHHHHHGGGTcEEEccTTccHHHHHHHHHHHHHHTTccEEEEEccccccccHHHHHHHHHHHHHHcccEEEEEEEGGGGGGHHHHHHHHHHccTTEEEEEEcccccccHHHHHHHHHTTcccEEEEEccccTTcEEEccHHHHHHHHTTTTcHHHHHHHHHHHTTHHHHHHHHHHHHTTcccHHHHHHHHHHHHTTccccccHHHHHHHccGGGcccHccccHHHHHHHHHHHTTccHHHHHcGGGccHHHHHHHHHHHTccHHHHHHHHHHHHHHHHHHHTcccc############### DISOP:02AL 9-20,91-94,352-369,422-439,446-447| PSIPRED ccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHccEEEEcccccHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHcccEEEEEccccccccccccHHHHHHHHHccHHHHHHHHHHHHHccHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHcccccccccccHHHHccHHHHHHHHHHHHcccHHHHHccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccc //