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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50641.1
DDBJ      :             phage integrase family protein
Swiss-Prot:             

Homologs  Archaea  39/68 : Bacteria  797/915 : Eukaryota  0/199 : Viruses  5/175   --->[See Alignment]
a.60.9d.163.1
:301 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   133->293 1a0pA PDBj 2e-22 33.3 %
:RPS:PDB   2->295 2crxA PDBj 5e-32 15.5 %
:RPS:SCOP  3->106 1crxA1  a.60.9.1 * 1e-16 12.9 %
:RPS:SCOP  114->300 1aihA  d.163.1.1 * 8e-31 31.1 %
:HMM:SCOP  2->101 1a0pA1 a.60.9.1 * 2.2e-05 14.4 %
:HMM:SCOP  107->297 4crxA2 d.163.1.1 * 2e-46 36.7 %
:RPS:PFM   10->88 PF02899 * Phage_integr_N 5e-04 27.6 %
:RPS:PFM   118->280 PF00589 * Phage_integrase 6e-23 37.7 %
:HMM:PFM   114->284 PF00589 * Phage_integrase 6.6e-38 34.5 165/173  
:HMM:PFM   14->87 PF02899 * Phage_integr_N 8.3e-10 18.3 71/84  
:HMM:PFM   74->144 PF06415 * iPGM_N 0.00044 15.5 71/223  
:BLT:SWISS 4->297 XERC_STAHJ 9e-35 28.9 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50641.1 GT:GENE ABO50641.1 GT:PRODUCT phage integrase family protein GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 2320097..2321002 GB:FROM 2320097 GB:TO 2321002 GB:DIRECTION + GB:PRODUCT phage integrase family protein GB:NOTE PFAM: phage integrase family protein KEGG: gka:GK2913 integrase/recombinase GB:PROTEIN_ID ABO50641.1 GB:DB_XREF GI:134052670 InterPro:IPR002104 LENGTH 301 SQ:AASEQ MTNEQMVKMFLIYQESRNLSPRTLEWYKYITAKFINYCNDNDIQIDSLKTPEARQWVNWLQKGSETQYKGNSINCHIRAIKTMFNYFMEDEYIDKNPFHKVSKIKVDNTIIHTFEPDEIKKMLAQLNKNTFYDLRDNLMLRIMYDCGLRVSEIINLKITDIDTDKNMFKVFGKGHKERMVPFGRSVKRELVKYLPKRNKAVPHDLDEGYLLCTNQGTPLHKRNILRKIRIVGQGAGIEGKRLSPHTYRHSFAKQYLMAGGDLFSLQTIMGHSSLNSTRRYITLLTEDIQKQHRQFSPLDNL GT:EXON 1|1-301:0| BL:SWS:NREP 1 BL:SWS:REP 4->297|XERC_STAHJ|9e-35|28.9|287/297| BL:PDB:NREP 1 BL:PDB:REP 133->293|1a0pA|2e-22|33.3|159/271| RP:PDB:NREP 1 RP:PDB:REP 2->295|2crxA|5e-32|15.5|291/305| RP:PFM:NREP 2 RP:PFM:REP 10->88|PF02899|5e-04|27.6|76/84|Phage_integr_N| RP:PFM:REP 118->280|PF00589|6e-23|37.7|154/168|Phage_integrase| HM:PFM:NREP 3 HM:PFM:REP 114->284|PF00589|6.6e-38|34.5|165/173|Phage_integrase| HM:PFM:REP 14->87|PF02899|8.3e-10|18.3|71/84|Phage_integr_N| HM:PFM:REP 74->144|PF06415|0.00044|15.5|71/223|iPGM_N| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF02899|IPR004107| GO:PFM GO:0015074|"GO:DNA integration"|PF02899|IPR004107| GO:PFM GO:0003677|"GO:DNA binding"|PF00589|IPR002104| GO:PFM GO:0006310|"GO:DNA recombination"|PF00589|IPR002104| GO:PFM GO:0015074|"GO:DNA integration"|PF00589|IPR002104| RP:SCP:NREP 2 RP:SCP:REP 3->106|1crxA1|1e-16|12.9|101/110|a.60.9.1| RP:SCP:REP 114->300|1aihA|8e-31|31.1|161/170|d.163.1.1| HM:SCP:REP 2->101|1a0pA1|2.2e-05|14.4|97/0|a.60.9.1|1/1|lambda integrase-like, N-terminal domain| HM:SCP:REP 107->297|4crxA2|2e-46|36.7|188/212|d.163.1.1|1/1|DNA breaking-rejoining enzymes| OP:NHOMO 2121 OP:NHOMOORG 841 OP:PATTERN --1111-11111111-2---------------1111111547211111------1111111111---- 22B1222222222222322-25223222222293241316125412-12111221212222232334---2222222232222---11344422222--52635332222222222222222222222222222421111124731D252-1----1-1----3--133A-------------12-12232332343442253467335333323245967A2442222324334724222224442222522222222213223333222222221131-1-----1-21122312223------------1-11---3-1-3743574345344623455233223312114554478461742222432222D322222222223222122312122222222222-222231212822222422DB2234212227211211322333333336222242222222222222222222222222222222-222322111622222222222545C2222222332294222234231212533222422222-22222222238232263-224234342222222253522222223132111111111111111113122398242261-22242268332222342723222--23232------23442322222222332-222322322222222222234293AD32222232223222223222222222-222232222232--12---------223223322323222122322323222222232242222222222253622222222233337222222233322222222222222--32332222--------322---------1--------2---22111-1112111262 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- -----------------11-----------1---------------------------------------------------------------1----------1--------------------------------------------------------------------- STR:NPRED 300 STR:RPRED 99.7 SQ:SECSTR #cHHHHHHHHHHHHHTGGccHHHHHHHHHHHHHHHHHHHHTTccTTTTcHHHHHHHHHHHHHHTHHTccHHHHHHHHHHHHHHHHTTTcccGGGcHHHHHHHHHHHHHcccccccHHHHHHHHHHHTTccHHHHHHHHHHHHHHHHcccHHHHHHcccccEEEEETTEEEEccccEEccHHHHHHHHHHHHTTTcTTcTTcccccEEETTTEccccccccHHHHHHHHHHHHHHHHcccccccTTHHHHHHHHHHHHccccGGGGHHHHTcccHHHHHHHHTTccTTccHHHHHHGTcTcc PSIPRED ccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccHHHccccccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHcccHHHccccccEEEEEcccccEEEEEccHHHHHHHHHHHHHHHHHcccccccccEEEccccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHccHHHHHHHHHHHcHHccc //