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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50700.1
DDBJ      :             selenocysteine-specific translation elongation factor SelB
Swiss-Prot:             

Homologs  Archaea  68/68 : Bacteria  912/915 : Eukaryota  198/199 : Viruses  0/175   --->[See Alignment]
a.102.3a.4.5b.43.3b.44.1c.37.1
:635 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   2->408 1wb1C PDBj 1e-38 31.3 %
:BLT:PDB   441->635 2uwmB PDBj 9e-35 39.9 %
:RPS:PDB   3->358 2bvnA PDBj 4e-44 30.3 %
:RPS:SCOP  29->314 1c82A1  a.102.3.2 * 1e-28 14.2 %
:RPS:SCOP  441->509 1lvaA2  a.4.5.35 * 2e-09 40.6 %
:RPS:SCOP  518->570 1wsuC1  a.4.5.35 * 7e-04 41.9 %
:RPS:SCOP  585->634 1lvaA4  a.4.5.35 * 1e-07 44.0 %
:HMM:SCOP  2->195 1f60A3 c.37.1.8 * 4.3e-54 40.9 %
:HMM:SCOP  174->268 1s0uA1 b.43.3.1 * 2.7e-28 44.2 %
:HMM:SCOP  265->364 1wb1A3 b.44.1.1 * 6.6e-36 60.0 %
:HMM:SCOP  439->511 1lvaA2 a.4.5.35 * 2.5e-17 37.0 %
:HMM:SCOP  512->575 1lvaA3 a.4.5.35 * 5.3e-14 35.9 %
:HMM:SCOP  578->637 1lvaA4 a.4.5.35 * 3.4e-14 50.0 %
:RPS:PFM   6->167 PF00009 * GTP_EFTU 2e-22 40.6 %
:RPS:PFM   451->497 PF09106 * SelB-wing_2 2e-07 48.9 %
:RPS:PFM   588->634 PF09107 * SelB-wing_3 1e-11 61.7 %
:HMM:PFM   2->168 PF00009 * GTP_EFTU 1.9e-45 41.0 166/189  
:HMM:PFM   587->634 PF09107 * SelB-wing_3 4.9e-22 60.4 48/50  
:HMM:PFM   450->505 PF09106 * SelB-wing_2 1.8e-17 42.9 56/59  
:HMM:PFM   194->260 PF03144 * GTP_EFTU_D2 1.7e-14 35.8 67/74  
:HMM:PFM   283->355 PF03143 * GTP_EFTU_D3 4.9e-05 28.2 71/101  
:HMM:PFM   420->458 PF10547 * P22_AR_N 0.00042 23.1 39/120  
:HMM:PFM   517->600 PF09743 * DUF2042 0.00062 15.5 84/273  
:BLT:SWISS 1->635 SELB_MOOTH e-151 46.5 %
:PROS 29->44|PS00301|EFACTOR_GTP
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50700.1 GT:GENE ABO50700.1 GT:PRODUCT selenocysteine-specific translation elongation factor SelB GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(2386857..2388764) GB:FROM 2386857 GB:TO 2388764 GB:DIRECTION - GB:PRODUCT selenocysteine-specific translation elongation factor SelB GB:NOTE TIGRFAM: selenocysteine-specific translation elongation factor; small GTP-binding protein PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; small GTP-binding protein domain KEGG: mta:Moth_2503 selenocysteine-specific translation elongation factor GB:PROTEIN_ID ABO50700.1 GB:DB_XREF GI:134052729 InterPro:IPR000795 InterPro:IPR003029 InterPro:IPR004161 InterPro:IPR004535 InterPro:IPR005225 LENGTH 635 SQ:AASEQ MKHIIIGTAGHVDHGKTLLIKTLTGMDTDRLKEEKERGISIELGFAQLKLPSGKQAGIVDVPGHEKFIKNMLAGVGGIDLVLLVIAADEGVMPQTKEHVDIIQLLQVKKGIVVLTKIDMVDEEWLSLVTEEIREYLKDTVLSEAPVVPVSSTTKQGIPQLLDLIDQFVDDTEERNSSGKLRLPIDRVFSVTGFGTVVTGTLLSGRVSTGDTVEIMPLGTVSRVRSIQVHGKKVEQARAGQRTAVNIIGVEVEEVKRGSVLVTPNSVEPSHRMDVKFLLLESAEKPLKNRARVRLYLGTDEILGRVRLLDREEIEPNQEAYVQLELEERGIAGKGDRFVIRSYSPMRTIGGGVVIEPNAPKHKRYRSEVLEGLATKEKGTPEELVNQLLAGKQGLFSPEEIIEATGLAGDDLKISIEKLQSEQQVKCIPVDKKSLYIAQFTYNKWRQEIKSMVINYHREYPLREGYPKEELRSRKFPFINNKHFQYLLQAMEIDGLLKLHDKTLALAEFTGELSGSQQKLVQDMICAIQEGNFQPPSWVEVVKKFRLKDAESQEYLQYFLRTGQLVKLSDDELYYTADRYQQAKTKIVEYLKENKEISVAQTRDLLKTSRKFTLPLLETMDRERLTRRVGDNRVLV GT:EXON 1|1-635:0| BL:SWS:NREP 1 BL:SWS:REP 1->635|SELB_MOOTH|e-151|46.5|632/634| PROS 29->44|PS00301|EFACTOR_GTP|PDOC00273| SEG 187->204|vfsvtgfgtvvtgtllsg| BL:PDB:NREP 2 BL:PDB:REP 2->408|1wb1C|1e-38|31.3|402/469| BL:PDB:REP 441->635|2uwmB|9e-35|39.9|193/203| RP:PDB:NREP 1 RP:PDB:REP 3->358|2bvnA|4e-44|30.3|353/372| RP:PFM:NREP 3 RP:PFM:REP 6->167|PF00009|2e-22|40.6|160/183|GTP_EFTU| RP:PFM:REP 451->497|PF09106|2e-07|48.9|47/58|SelB-wing_2| RP:PFM:REP 588->634|PF09107|1e-11|61.7|47/50|SelB-wing_3| HM:PFM:NREP 7 HM:PFM:REP 2->168|PF00009|1.9e-45|41.0|166/189|GTP_EFTU| HM:PFM:REP 587->634|PF09107|4.9e-22|60.4|48/50|SelB-wing_3| HM:PFM:REP 450->505|PF09106|1.8e-17|42.9|56/59|SelB-wing_2| HM:PFM:REP 194->260|PF03144|1.7e-14|35.8|67/74|GTP_EFTU_D2| HM:PFM:REP 283->355|PF03143|4.9e-05|28.2|71/101|GTP_EFTU_D3| HM:PFM:REP 420->458|PF10547|0.00042|23.1|39/120|P22_AR_N| HM:PFM:REP 517->600|PF09743|0.00062|15.5|84/273|DUF2042| GO:PFM:NREP 12 GO:PFM GO:0003924|"GO:GTPase activity"|PF00009|IPR000795| GO:PFM GO:0005525|"GO:GTP binding"|PF00009|IPR000795| GO:PFM GO:0001514|"GO:selenocysteine incorporation"|PF09106|IPR015190| GO:PFM GO:0003723|"GO:RNA binding"|PF09106|IPR015190| GO:PFM GO:0003746|"GO:translation elongation factor activity"|PF09106|IPR015190| GO:PFM GO:0005525|"GO:GTP binding"|PF09106|IPR015190| GO:PFM GO:0005737|"GO:cytoplasm"|PF09106|IPR015190| GO:PFM GO:0001514|"GO:selenocysteine incorporation"|PF09107|IPR015191| GO:PFM GO:0003723|"GO:RNA binding"|PF09107|IPR015191| GO:PFM GO:0003746|"GO:translation elongation factor activity"|PF09107|IPR015191| GO:PFM GO:0005525|"GO:GTP binding"|PF09107|IPR015191| GO:PFM GO:0005737|"GO:cytoplasm"|PF09107|IPR015191| RP:SCP:NREP 4 RP:SCP:REP 29->314|1c82A1|1e-28|14.2|274/370|a.102.3.2| RP:SCP:REP 441->509|1lvaA2|2e-09|40.6|69/73|a.4.5.35| RP:SCP:REP 518->570|1wsuC1|7e-04|41.9|43/48|a.4.5.35| RP:SCP:REP 585->634|1lvaA4|1e-07|44.0|50/60|a.4.5.35| HM:SCP:REP 2->195|1f60A3|4.3e-54|40.9|193/239|c.37.1.8|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 174->268|1s0uA1|2.7e-28|44.2|95/0|b.43.3.1|1/1|Translation proteins| HM:SCP:REP 265->364|1wb1A3|6.6e-36|60.0|100/0|b.44.1.1|1/1|EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain| HM:SCP:REP 439->511|1lvaA2|2.5e-17|37.0|73/0|a.4.5.35|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 512->575|1lvaA3|5.3e-14|35.9|64/0|a.4.5.35|2/2|"Winged helix" DNA-binding domain| HM:SCP:REP 578->637|1lvaA4|3.4e-14|50.0|60/60|a.4.5.35|1/1|"Winged helix" DNA-binding domain|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ccEEEEEEEccTTccHHHHHHHHHHHHHHHHcccccccGGGcTTEEEEEcccccEEEEEEccccGGGHHHHHHHHTTcccEEEEEETTTcccHHHHHHHHHHHHHTcccEEEEEEcGGGccHHHHHHHHHHHHHHHHTccTTTccEEEccHHHHHTTcHHHHHHHHHHcccccccTTcccEEEcccEEEETTTEEEEEEEccccEEETTcEEEEEcccEEEEEEEEEETTEEEcEEETTcEEEEEEEcccGGGccTTcEEEcTTccEEEEEEEEEEEEccGGGccEETTcccEEEETTEEEEEEEccTTccEEcTTcEEEEEEEEEEEEEEcTTcEEEEEETTccEEEEEEEEEEEccGGTEEccEccHHHHTccHHHHHHHHHHcTTTHHHHccccccEEccTTccEccHHHHHHHHHHHHcEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHcTTcccEEHHHHHHHHcTTccHHHHHHHHHHHHHTTcEEEETTEEEETTccccccHHHHHHHHHHHHHHHHHTTccccHHHHHHHTTccHHHHHHHHHHHHHTTcEEEccccccEEEHHHHHHHHHHHHHHHHTTccccHHHHHHHHTccHHHHHHHHHHHHHTTcEEEETTEEEEc PSIPRED cccEEEEEEccccccHHHHHHHHccccccccHHHHHccEEEEEEEEEEEEccccEEEEEEcccHHHHHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHHHHHHHHHHHHccccccEEEEccccccccHHHHHHHcHHccccccccccccccEEEEEEEEEEcccEEEEEEEEEEEEEccccEEEEEEccEEEEEEEEEEccccEEEEccccccEEEEEccccccccccEEEEEccccccEEEEEEEEEEEEccccccccccEEEEEEEEccEEEEEEEccHHHcccccEEEEEEEEcccEEEEcccEEEEEccccEEEEEEEEEEEcccccccHHcHHHHcccEEEHHccHHHHHHHHHHHHcccccHHHHHHHHccccccEEEEEccccccccEEEEEEcccEEEEEHHHHHHHHHHHHHHHHHHHHHccHHccccHHHHHHHHHccccHHHHHHHHHHHHHcccEEEEccEEEcccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHccccHHHHHHHHHHHHHcccEEEEEccEEEEcHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHHHHcccEEEEccEEEEc //