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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50708.1
DDBJ      :             Radical SAM domain protein
Swiss-Prot:             

Homologs  Archaea  44/68 : Bacteria  170/915 : Eukaryota  12/199 : Viruses  0/175   --->[See Alignment]
c.1.28
:355 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   59->305 3cixA PDBj 9e-07 27.4 %
:RPS:PDB   5->350 3cixA PDBj 6e-28 19.1 %
:RPS:SCOP  16->344 1r30A  c.1.28.1 * 2e-24 19.3 %
:HMM:SCOP  14->345 1r30A_ c.1.28.1 * 1.8e-55 27.6 %
:RPS:PFM   62->217 PF04055 * Radical_SAM 8e-04 30.2 %
:HMM:PFM   59->225 PF04055 * Radical_SAM 1.5e-19 21.9 155/166  
:BLT:SWISS 2->353 COFH_METKA 3e-74 44.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50708.1 GT:GENE ABO50708.1 GT:PRODUCT Radical SAM domain protein GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(2398305..2399372) GB:FROM 2398305 GB:TO 2399372 GB:DIRECTION - GB:PRODUCT Radical SAM domain protein GB:NOTE PFAM: Radical SAM domain protein KEGG: chy:CHY_1804 radical SAM domain protein GB:PROTEIN_ID ABO50708.1 GB:DB_XREF GI:134052737 InterPro:IPR005244 InterPro:IPR007197 LENGTH 355 SQ:AASEQ MLQVKEILNKAVAGERLSVEEGVALLNSSDLIQLGAAANTIRKRLHPKNRTTFIIDRNINYTNICTCKCKFCAFWREPSDPDAYILPQEELYQKIEETIAVGGTEILVQGGLHPELGLDYYVDLLKSIKERYNIHIHSFSPPEIWHIARKEGLPLLRVIEALKNAGLDSIPGGGAEILDNRVRRIISPDKVTWEEWMEVMTIAHCLDMKTTATMMFGHVETPEERILHMVRVRDTQDKTGGFTAFIPWSFQPKNTKLGGETTSGIDYLKTLAVARLMLDNVKNIQASWVTQGAKMAQVSLNFGANDFGSTMLEENVVRAAGVTYRVALQEILRCIREAGFRPAQRTTDYRIIKEM GT:EXON 1|1-355:0| BL:SWS:NREP 1 BL:SWS:REP 2->353|COFH_METKA|3e-74|44.3|348/369| BL:PDB:NREP 1 BL:PDB:REP 59->305|3cixA|9e-07|27.4|223/345| RP:PDB:NREP 1 RP:PDB:REP 5->350|3cixA|6e-28|19.1|325/345| RP:PFM:NREP 1 RP:PFM:REP 62->217|PF04055|8e-04|30.2|139/164|Radical_SAM| HM:PFM:NREP 1 HM:PFM:REP 59->225|PF04055|1.5e-19|21.9|155/166|Radical_SAM| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF04055|IPR007197| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF04055|IPR007197| RP:SCP:NREP 1 RP:SCP:REP 16->344|1r30A|2e-24|19.3|300/314|c.1.28.1| HM:SCP:REP 14->345|1r30A_|1.8e-55|27.6|304/312|c.1.28.1|1/1|Radical SAM enzymes| OP:NHOMO 388 OP:NHOMOORG 226 OP:PATTERN 22-2-------------2222223111111111111112221222122122222--------22--33 22213---------11111-1111111111111111112233331---------------333-1-13331-----------122222-----------------2---222222222222222--------------------22-111111--11------11111111------------22222---------------------22--------------------22----------------------------------------------------------------------------------------------------------------------2--22--2222--22-------222---1------------1---1--------------------------------------------1-------------------------------------------------------1--------------------1-------------------------------------------------1----22-222222222-2222222222222---22222222222222222222322222--------1-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111----------------------------------------------2-- -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111181-1111-----1------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 349 STR:RPRED 98.3 SQ:SECSTR ####HHHHHHHHTTcHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccEEEEEEEEEEEEEEcccccccTTcTTcTTccccccccccHHHHHHHHHHHHHTTccEEEEEEcccGGGTTHHHHHHHHHHHTTcEEEEEcccccHTccGGGGGTGGcEHHHHHHHHTTccEEEcccccccHHHHHHHcTHHTccHHHHHHHHHHHHTTcEEEEccEEccTTccHHHHHHHHHHHHHHTccEEccEEccccTTcTTTTcHHTccccHHHHHHHHHHHHHHcTccccccHHHHHHcTTHHHHHHTTTccEEccccccTGGcccccccTTcHHHHHHHHHHHTTcEEccccccccHTT## DISOP:02AL 1-1,257-258| PSIPRED cccHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHccccEEcccHHHHHHHHHHccccHHHHHHHHHHccccccccccHHHccHHHHHHHccccccHHHHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHccHHHHHHHHHccccccccccccccEEccccccccccHHHHHHHHHHcccccccccccccccccc //