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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50792.1
DDBJ      :             transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  736/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:299 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->192 3fzvB PDBj 4e-14 28.6 %
:RPS:PDB   1->207 1b9nB PDBj 6e-30 10.1 %
:RPS:SCOP  1->104 1b9mA1  a.4.5.8 * 3e-22 14.4 %
:RPS:SCOP  89->289 1i69A  c.94.1.1 * 1e-24 17.2 %
:HMM:SCOP  1->112 1b9mA1 a.4.5.8 * 6.3e-28 36.2 %
:HMM:SCOP  82->297 1uthA_ c.94.1.1 * 1.6e-39 29.2 %
:RPS:PFM   3->62 PF00126 * HTH_1 9e-11 46.7 %
:RPS:PFM   90->289 PF03466 * LysR_substrate 1e-17 29.9 %
:HMM:PFM   87->293 PF03466 * LysR_substrate 4.3e-46 36.8 204/209  
:HMM:PFM   4->62 PF00126 * HTH_1 1.7e-22 44.1 59/60  
:BLT:SWISS 3->291 CMPR_SYNY3 8e-37 33.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50792.1 GT:GENE ABO50792.1 GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 2496260..2497159 GB:FROM 2496260 GB:TO 2497159 GB:DIRECTION + GB:PRODUCT transcriptional regulator, LysR family GB:NOTE PFAM: regulatory protein, LysR; LysR, substrate-binding KEGG: mta:Moth_1825 transcriptional regulator, LysR family GB:PROTEIN_ID ABO50792.1 GB:DB_XREF GI:134052821 InterPro:IPR000847 InterPro:IPR005119 LENGTH 299 SQ:AASEQ MNLSTLQTFIVVAEKKNLSLAAQEIHITQPAISKQLSVLEAYFGTALVERKGRGVSLTPAGELFYRHAREMLEQLNKAEREIRQMSGEIRGRMILWASTIPGHYILPPIIGTFKKEYPDVQTVLQIGDSKEAIRKLLEESAHLAAVGILPNNKRIEGIKFFSDELVVIAPTDHPFAELNEVPIEKLAKEPLVWRELGSGTRSVVETFLTKGGLSTDKLNIALELGSTGAIVTAVEAGAGVSVVSRWATLKEQALNKIATLKIKDLPMQRDLFLVYPRRKNRSPMIDAFIKYALKQNPPI GT:EXON 1|1-299:0| BL:SWS:NREP 1 BL:SWS:REP 3->291|CMPR_SYNY3|8e-37|33.0|285/304| SEG 231->244|vtaveagagvsvvs| BL:PDB:NREP 1 BL:PDB:REP 3->192|3fzvB|4e-14|28.6|182/284| RP:PDB:NREP 1 RP:PDB:REP 1->207|1b9nB|6e-30|10.1|199/245| RP:PFM:NREP 2 RP:PFM:REP 3->62|PF00126|9e-11|46.7|60/60|HTH_1| RP:PFM:REP 90->289|PF03466|1e-17|29.9|197/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 87->293|PF03466|4.3e-46|36.8|204/209|LysR_substrate| HM:PFM:REP 4->62|PF00126|1.7e-22|44.1|59/60|HTH_1| GO:PFM:NREP 2 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00126|IPR000847| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00126|IPR000847| RP:SCP:NREP 2 RP:SCP:REP 1->104|1b9mA1|3e-22|14.4|104/122|a.4.5.8| RP:SCP:REP 89->289|1i69A|1e-24|17.2|192/206|c.94.1.1| HM:SCP:REP 1->112|1b9mA1|6.3e-28|36.2|105/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 82->297|1uthA_|1.6e-39|29.2|212/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 9157 OP:NHOMOORG 757 OP:PATTERN ----------1--1---------1-----------11111111----------1-------------- 4663A22466622197511-13113G11111355658JPQ-648-1221--14663-4--242-75NDHA3-222-11226B4211111111-1------1711221213---------------1---1----1-45534---2174375553433111111353A8662111111111111231-----63GEEEEEEEE7DCEFFDA5DBDJECE244C552777866Oc1445555455554557356A233534334229A3354135113412111-----22---------1--1111111111111--111---2-54DD666678636439664222B311275722CE452212632221--4422644311111D8OKQ55BEHBE8AA9AA8A988K-DDHABZCNER41jSSMLPKjjSVTWO8A4CFQ788A8JJBABBBBBB9BBBA677-----------------------------11BF43P*oWy******UVVXSxx*zcbccQX*k*v**v-4fbPHKQLK*NqE*VCNB7668KG34554345547EF5331424121A334-5246363528857A8134-21-1111-1---------13122EDMAJ9A9S8FFDHJHHG7FGHCDDHFJJDQK1--454A------RJMMAOHMMNJMKIIML-OMLMOHHLNLOJNLLLMLGitgJO9IDPGMHMMQNONLKOKHKbFGEGGFH6-D78899878999--1511111567747KMe666A37355655555MNNLPBI7AAb9nmomlwluQvxwsFVXZ3531345357DJIOHGHHGILKHHIIEFJFF9CA53331-3211------------1-------------------------------------381 -------------2------------------------------------------------------------------------------------------------------------------------------------------------8----3------C--2-1---------2--C-----3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 295 STR:RPRED 98.7 SQ:SECSTR EcHHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTccccccccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHTcHHHTTTccccccEEEEEEEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEcGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGGHHHHTHHHcccEEEEEEccHHHHHHHHHHTccEEEEEGGGHccTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTT#### DISOP:02AL 85-86,298-300| PSIPRED ccHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEccccccccEEEEEEEcccEEEEEcccccccccccccHHHHccccEEEcccccHHHHHHHHHHHHccccccccEEEEEEccHHHHHHHHHccccEEEEEHHHHHHHcccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHcccc //