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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50796.1
DDBJ      :             RNA polymerase, sigma-24 subunit, ECF subfamily
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  624/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.1a.4.13a.74.1
:200 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->185 1or7A PDBj 4e-33 41.6 %
:RPS:PDB   1->189 3dxjF PDBj 1e-26 13.7 %
:RPS:SCOP  2->94 1or7A2  a.177.1.1 * 2e-22 47.8 %
:RPS:SCOP  126->181 1k78A1  a.4.1.5 * 5e-10 23.2 %
:RPS:SCOP  156->200 1c9bA2  a.74.1.2 * 5e-06 17.8 %
:HMM:SCOP  3->110 1or7A2 a.177.1.1 * 2.6e-29 43.9 %
:HMM:SCOP  117->187 1rp3A2 a.4.13.2 * 3.7e-18 42.3 %
:RPS:PFM   23->89 PF04542 * Sigma70_r2 7e-13 51.5 %
:RPS:PFM   135->181 PF08281 * Sigma70_r4_2 2e-07 57.4 %
:HMM:PFM   23->91 PF04542 * Sigma70_r2 1.3e-23 42.0 69/71  
:HMM:PFM   130->181 PF08281 * Sigma70_r4_2 1.2e-22 51.9 52/54  
:BLT:SWISS 3->189 RPOE_HAEIN 2e-32 38.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50796.1 GT:GENE ABO50796.1 GT:PRODUCT RNA polymerase, sigma-24 subunit, ECF subfamily GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(2499164..2499766) GB:FROM 2499164 GB:TO 2499766 GB:DIRECTION - GB:PRODUCT RNA polymerase, sigma-24 subunit, ECF subfamily GB:NOTE PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2 KEGG: sth:STH845 RNA polymerase ECF-type sigma factor GB:PROTEIN_ID ABO50796.1 GB:DB_XREF GI:134052825 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013249 LENGTH 200 SQ:AASEQ MPLEDQLLVERSKKGDREAFEHLVRLYENKVYTIAYRLMGNHADASDLAQDAFIKIYQALPNFRGDSSFSTWIYHITVNVCRDELRKRQRRPTVSLDDNSSDSNNSNTYEIRSNDPGPEEMLDRSETQAMIQACLNTLSDDYREIIVMREIQELAYEEIAEILGCSLGTVKSRLSRARQALKEKISKQMELITPAKRLAK GT:EXON 1|1-200:0| BL:SWS:NREP 1 BL:SWS:REP 3->189|RPOE_HAEIN|2e-32|38.4|185/189| SEG 97->107|ddnssdsnnsn| BL:PDB:NREP 1 BL:PDB:REP 3->185|1or7A|4e-33|41.6|173/181| RP:PDB:NREP 1 RP:PDB:REP 1->189|3dxjF|1e-26|13.7|183/349| RP:PFM:NREP 2 RP:PFM:REP 23->89|PF04542|7e-13|51.5|66/70|Sigma70_r2| RP:PFM:REP 135->181|PF08281|2e-07|57.4|47/54|Sigma70_r4_2| HM:PFM:NREP 2 HM:PFM:REP 23->91|PF04542|1.3e-23|42.0|69/71|Sigma70_r2| HM:PFM:REP 130->181|PF08281|1.2e-22|51.9|52/54|Sigma70_r4_2| GO:PFM:NREP 10 GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 3 RP:SCP:REP 2->94|1or7A2|2e-22|47.8|92/113|a.177.1.1| RP:SCP:REP 126->181|1k78A1|5e-10|23.2|56/63|a.4.1.5| RP:SCP:REP 156->200|1c9bA2|5e-06|17.8|45/109|a.74.1.2| HM:SCP:REP 3->110|1or7A2|2.6e-29|43.9|107/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 117->187|1rp3A2|3.7e-18|42.3|71/0|a.4.13.2|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 1997 OP:NHOMOORG 626 OP:PATTERN -------------------------------------------------------------------- EIS1N43422243364446-45224734444475554624423335122221342114--747254754961111111--823-----DEGD-D33---22B5ADE4M6E---------------23221112232666B9111C442222221211------22231111------------221--11131677777366-66746624777677833397331--11-YA--------------------------------------------------111-------------------------------------3A526222332222351551221455--D1-33CC625313121-221--D-A2222-11-11-8665324334411111111113-34633636282-33356463475445335321314223111111111-1111-21------------------------------3433-233325444252333322233333225132233-1441122331234413311222111111111111323231--11--21----22-11-4116776DM161------------------------11222528734414544424333344333444---1123------11121111111111111-1111111111111111111111221111111111111111111111111111-211111111111--18-----111112211111111112111111------1---1344443646532332223---------11111333335323343375763331111--32442222--------212-------------------------11111111113C2 ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------2------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 197 STR:RPRED 98.5 SQ:SECSTR TccHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTcccHHHHHHHHHHHHHHHHHHHHcccccccccccc#HHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHHHHHHHT## DISOP:02AL 1-1,194-195,197-201| PSIPRED ccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHcccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcc //