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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50802.1
DDBJ      :             DEAD/DEAH box helicase domain protein
Swiss-Prot:             

Homologs  Archaea  62/68 : Bacteria  830/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
c.37.1
:482 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->376 2hyiC PDBj 4e-73 37.2 %
:RPS:PDB   1->477 1cu1A PDBj 1e-72 9.1 %
:RPS:SCOP  15->346 1pjrA1  c.37.1.19 * 1e-53 10.0 %
:HMM:SCOP  69->358 1wp9A2 c.37.1.19 * 6.8e-78 37.5 %
:RPS:PFM   26->187 PF00270 * DEAD 5e-33 43.8 %
:RPS:PFM   260->334 PF00271 * Helicase_C 2e-17 54.7 %
:HMM:PFM   26->191 PF00270 * DEAD 1.8e-54 40.0 165/167  
:HMM:PFM   259->335 PF00271 * Helicase_C 1.2e-30 50.6 77/78  
:BLT:SWISS 1->474 CSHA_GEOKA e-173 65.4 %
:PROS 149->157|PS00039|DEAD_ATP_HELICASE

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50802.1 GT:GENE ABO50802.1 GT:PRODUCT DEAD/DEAH box helicase domain protein GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(2504876..2506324) GB:FROM 2504876 GB:TO 2506324 GB:DIRECTION - GB:PRODUCT DEAD/DEAH box helicase domain protein GB:NOTE PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein SMART: DEAD-like helicases-like KEGG: gka:GK0226 ATP-dependent RNA helicase GB:PROTEIN_ID ABO50802.1 GB:DB_XREF GI:134052831 InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR014001 InterPro:IPR014014 InterPro:IPR014021 LENGTH 482 SQ:AASEQ MSSFYELGLSKSVSESIKLMGFEEATPIQEKAIPIALSGGDLIGQAHTGTGKTAAFGIPMVERFSRQQDTIQGLIITPTRELAVQVAEEMNRIGQVKGIHTLPVYGGQDINRQIRALKKKPHIIVGTPGRLMDHMKRKTIRLNELTMVVLDEADEMLNMGFIEDIEEILQQVPEERQTLLFSATISKPIQELARRFLKNPEFIAIKAKEVTVPSIDQSYVEVQEKQKFEVLSTFLDIQSPDLAIVFGRTKRRVDELYEALSKRGYSAEGIHGDLTQSKRESVLRQFKEGIIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGEAITFVTPREMNHLRLIERITKHKISRRPIPTIKEVIEGQQRLAVEKLLKVVEEGGFEHYRRLAEDLLIEQDAATLVAAALRMITKEPDRTPVQLTEERPLRSKKAESFQPRMRKPYKDNRGKIEGKKRGEFKGHRRGKKRPSI GT:EXON 1|1-482:0| BL:SWS:NREP 1 BL:SWS:REP 1->474|CSHA_GEOKA|e-173|65.4|463/467| PROS 149->157|PS00039|DEAD_ATP_HELICASE|PDOC00039| BL:PDB:NREP 1 BL:PDB:REP 3->376|2hyiC|4e-73|37.2|374/392| RP:PDB:NREP 1 RP:PDB:REP 1->477|1cu1A|1e-72|9.1|440/645| RP:PFM:NREP 2 RP:PFM:REP 26->187|PF00270|5e-33|43.8|162/167|DEAD| RP:PFM:REP 260->334|PF00271|2e-17|54.7|75/76|Helicase_C| HM:PFM:NREP 2 HM:PFM:REP 26->191|PF00270|1.8e-54|40.0|165/167|DEAD| HM:PFM:REP 259->335|PF00271|1.2e-30|50.6|77/78|Helicase_C| GO:PFM:NREP 6 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00270|IPR011545| GO:PFM GO:0005524|"GO:ATP binding"|PF00270|IPR011545| GO:PFM GO:0008026|"GO:ATP-dependent helicase activity"|PF00270|IPR011545| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| RP:SCP:NREP 1 RP:SCP:REP 15->346|1pjrA1|1e-53|10.0|309/315|c.37.1.19| HM:SCP:REP 69->358|1wp9A2|6.8e-78|37.5|269/0|c.37.1.19|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 11292 OP:NHOMOORG 1091 OP:PATTERN 1112122333333353432323121--1---1111111111113334316334121122222331-23 1131333333332332322-23113422222233334555-42443532655434423--4432343676222222221132-11111777826442--7397749A928--------------23212323232311111111213123222----23233121-3445312111112111141221--1225777777676777777557765777332646466666676544444444444444444445454554444445445544444223333333333333333333323333333333333333333333333-634866666667673533544455-2-13211953511121--1-1-215-7323322212443444224433333333333333-4443343324224443443444434433443254454435555555536664333------------111111111111211111333424555466666665555556655554566654563455555655556654556464463222222322244684925253215333-555545655555575524--1-------1111111116111533BB8856D7ABBBEEEEEEEEEEECEEDEDD1-2232411111165666666666666666-6666666666656666666666665566666666666656556666566665165566775566711452222244443765A434444344444444222222222267777789888777789783222222226CCCCAAAAAADDCC55677766663333233-554444--------21322232---1--12---11121-11122111------45 UUPQZUS5*TPLSRVNPQOPPPPPPOQPPPOOONOOPPNNNNNOOPQQQPQRTSPQPROQOPROOOOPHQROOOOQRLRSPQOPOONN-OcQPQSTSOQOROTcgeCV*c*jwjohzYXbRYdVurV*W**l3vi*SZZUmYbhVTacVTdTPyWkZVcd*wicXVWlYf*klmXObbj*hgeUcwl**P*vZYfZbbe --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---- STR:NPRED 479 STR:RPRED 99.4 SQ:SECSTR EEETTEEEEEEEEEHHHHHHHHHcccccccccccccccccEEEEEccccccTTTHHHHHHHTTccTTccTccEEEEEccHHHHHHHHHHHHHHTGGTTccEEEcccccEEEcccccccccccEEEEEHHHHHHHTcccTTcccEEEEETTTcccHHHHHHHHHHHHHTTTTTccEEEEEEcccTTccccccHHHTTccccEEEcccccccccTTEEEEEccccccEEETTEEEcGGGTcccEEEEEccccHHHHHHHHHHHHTTccEEEEcTTcccccccccccEEEEEcTTHHHHccccccEEEEccEEEEEEEEcccEEEEEEEEccHHHHHHHHTTccccccEEEEEccccccccccccHHHHHHHHHHHHTccccHHHHHHHHHHHHHcTTcccccccHHHHHHHHHTcccccHccccHHHHHHHHHHHHHTTcccccccGGGGGGGGGGGGccccEEcccccccccccEEcccc### DISOP:02AL 373-405,420-483| PSIPRED cccHHHccccHHHHHHHHHcccccccHHHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHHHHHHHHHcccEEEEEEccccHHHHHHHHHccccEEEEccHHHHHHHHccccccccEEEEEEEccHHHHccccHHHHHHHHHHccHHHcEEEEEccccHHHHHHHHHHccccEEEEEccccccccccEEEEEEEcHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHHHcccccEEEEccHHHcccccccccEEEEccccccHHHHccccccccccccccEEEEEEcHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc //