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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO50966.1
DDBJ      :             ribonuclease H
Swiss-Prot:RNH_DESRM    RecName: Full=Ribonuclease H;         Short=RNase H;         EC=3.1.26.4;

Homologs  Archaea  0/68 : Bacteria  629/915 : Eukaryota  101/199 : Viruses  2/175   --->[See Alignment]
c.55.3
:159 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->154 1gocA PDBj 2e-50 58.2 %
:RPS:PDB   9->143 3d0pA PDBj 9e-31 24.6 %
:RPS:SCOP  10->155 1f21A  c.55.3.1 * 2e-50 54.5 %
:HMM:SCOP  9->155 1rilA_ c.55.3.1 * 3.4e-57 52.4 %
:RPS:PFM   13->145 PF00075 * RnaseH 4e-26 53.7 %
:HMM:PFM   10->149 PF00075 * RnaseH 1.3e-38 39.8 128/131  
:BLT:SWISS 1->159 RNH_DESRM 5e-96 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO50966.1 GT:GENE ABO50966.1 GT:PRODUCT ribonuclease H GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 2672090..2672569 GB:FROM 2672090 GB:TO 2672569 GB:DIRECTION + GB:PRODUCT ribonuclease H GB:NOTE PFAM: ribonuclease H KEGG: sat:SYN_00291 ribonuclease H GB:PROTEIN_ID ABO50966.1 GB:DB_XREF GI:134052995 InterPro:IPR002156 LENGTH 159 SQ:AASEQ MNTNQNTNLKEITMYTDGACSGNPGPGGYGVVMLYKGHRKELSAGFRDTTNNRMELLATIVGLETLKEKCNVNLYTDSQYVVNAIEKGWAKKWRANGWMRNKKEPALNPDLWERLLKLCEFHNVKFNWVKGHAGHPENERCDQLAVAAAKQPNLPLDVR GT:EXON 1|1-159:0| SW:ID RNH_DESRM SW:DE RecName: Full=Ribonuclease H; Short=RNase H; EC=3.1.26.4; SW:GN Name=rnhA; OrderedLocusNames=Dred_2456; SW:KW Complete proteome; Cytoplasm; Endonuclease; Hydrolase; Magnesium;Metal-binding; Nuclease. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->159|RNH_DESRM|5e-96|100.0|159/159| GO:SWS:NREP 5 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0004519|"GO:endonuclease activity"|Endonuclease| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0004518|"GO:nuclease activity"|Nuclease| BL:PDB:NREP 1 BL:PDB:REP 9->154|1gocA|2e-50|58.2|146/156| RP:PDB:NREP 1 RP:PDB:REP 9->143|3d0pA|9e-31|24.6|130/134| RP:PFM:NREP 1 RP:PFM:REP 13->145|PF00075|4e-26|53.7|123/132|RnaseH| HM:PFM:NREP 1 HM:PFM:REP 10->149|PF00075|1.3e-38|39.8|128/131|RnaseH| GO:PFM:NREP 2 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00075|IPR002156| GO:PFM GO:0004523|"GO:ribonuclease H activity"|PF00075|IPR002156| RP:SCP:NREP 1 RP:SCP:REP 10->155|1f21A|2e-50|54.5|145/152|c.55.3.1| HM:SCP:REP 9->155|1rilA_|3.4e-57|52.4|147/0|c.55.3.1|1/1|Ribonuclease H-like| OP:NHOMO 816 OP:NHOMOORG 732 OP:PATTERN -------------------------------------------------------------------- --111----------------1---1------1111-----1---1-111111111-111--111-11-1-11111--1111--1111--------1--1-111-11-21---------------1111111111111111---1-111111-111111111111111111111111-1111122111---1---------------------------------------11---------------------111111-1-1111121-11--------------------------------------------------1---11111111-1-1-------1-1--1--11--11-111-11111---1-1111111111111112121111111111111111-21121-111111122111222112221111111111111111111111111111111111111111111-11111111111112111111111111111111111111111111111211111111111111111111111111111111111111111212122111111111112221112221111111111111111111111111111111112111111--111111111222111121221221-1111111----11111111111111111-11111111111111111111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111-1111111111211111111111111111112121111112211111111111111111111--------------11--------------------------------------- ------------111--2-11211-111111-11--1--11-11-11-1211-11-1111116------21-211------221-3-1--2--111-1--1---------133111-111111-11-11151-11-11--1-11--1---1-11-111212-131212--A-112-------------1-----2---- ----------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1---- STR:NPRED 158 STR:RPRED 99.4 SQ:SECSTR cccccccccccccEEEEEEEccccEEEEEEEEETTTccEEEEEEEEEEEcHHHHHHHHHHHHHHHHHHTccccEEEccHHHHHHHEHTHHHHTcccccccccGGGHHHHHHHHHHHHHHHHccccccEEEccHHHHcccTTccHHHHHHHcccccccT# DISOP:02AL 1-7,148-160| PSIPRED ccccccccccEEEEEEcccccccccccEEEEEEEEccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHHccccccccc //