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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO51003.1
DDBJ      :             protein of unknown function DUF558
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  672/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
b.122.1c.116.1
:247 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->247 1nxzB PDBj 5e-29 35.0 %
:RPS:PDB   1->237 2egvA PDBj 1e-50 25.6 %
:RPS:SCOP  1->69 1nxzA1  b.122.1.2 * 1e-17 31.9 %
:RPS:SCOP  73->247 1nxzA2  c.116.1.5 * 1e-33 32.9 %
:HMM:SCOP  1->71 1nxzA1 b.122.1.2 * 1.2e-18 42.3 %
:HMM:SCOP  72->247 1nxzA2 c.116.1.5 * 1.9e-55 48.0 %
:RPS:PFM   18->236 PF04452 * Methyltrans_RNA 2e-41 43.6 %
:HMM:PFM   18->240 PF04452 * Methyltrans_RNA 2.9e-76 46.8 220/225  
:BLT:SWISS 1->247 RSME_HAEIN 9e-33 36.1 %
:PROS 99->114|PS00012|PHOSPHOPANTETHEINE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO51003.1 GT:GENE ABO51003.1 GT:PRODUCT protein of unknown function DUF558 GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION complement(2712456..2713199) GB:FROM 2712456 GB:TO 2713199 GB:DIRECTION - GB:PRODUCT protein of unknown function DUF558 GB:NOTE PFAM: protein of unknown function DUF558 KEGG: chy:CHY_0418 conserved hypothetical protein TIGR00046 GB:PROTEIN_ID ABO51003.1 GB:DB_XREF GI:134053032 InterPro:IPR006162 InterPro:IPR006700 LENGTH 247 SQ:AASEQ MPRFFVQPEQINSDTAVINGPDVKHISRVLRMETGNNLTLLDGRGNVYLAQILEINKQEVHCRILEQQEATSEPTVKVTLVQGLPKGDKMETIIQKCTELGVSSIIPLAAARSIVKLDAKKAAERVQRWQRVAVEAAKQCRRSGIPEVYMLSSWDEILQQIPPDALVLMPWEGERTKSLREVLQTRPMAPGQVYIFIGPEGGFEEEEVERVKEKGFYPVTLGSRILRTETAGPAALTMVLYQFGELG GT:EXON 1|1-247:0| BL:SWS:NREP 1 BL:SWS:REP 1->247|RSME_HAEIN|9e-33|36.1|233/245| PROS 99->114|PS00012|PHOSPHOPANTETHEINE|PDOC00012| SEG 200->216|eggfeeeevervkekgf| BL:PDB:NREP 1 BL:PDB:REP 1->247|1nxzB|5e-29|35.0|237/241| RP:PDB:NREP 1 RP:PDB:REP 1->237|2egvA|1e-50|25.6|223/229| RP:PFM:NREP 1 RP:PFM:REP 18->236|PF04452|2e-41|43.6|218/225|Methyltrans_RNA| HM:PFM:NREP 1 HM:PFM:REP 18->240|PF04452|2.9e-76|46.8|220/225|Methyltrans_RNA| GO:PFM:NREP 2 GO:PFM GO:0006364|"GO:rRNA processing"|PF04452|IPR006700| GO:PFM GO:0008168|"GO:methyltransferase activity"|PF04452|IPR006700| RP:SCP:NREP 2 RP:SCP:REP 1->69|1nxzA1|1e-17|31.9|69/72|b.122.1.2| RP:SCP:REP 73->247|1nxzA2|1e-33|32.9|170/174|c.116.1.5| HM:SCP:REP 1->71|1nxzA1|1.2e-18|42.3|71/72|b.122.1.2|1/1|PUA domain-like| HM:SCP:REP 72->247|1nxzA2|1.9e-55|48.0|171/174|c.116.1.5|1/1|alpha/beta knot| OP:NHOMO 685 OP:NHOMOORG 681 OP:PATTERN -------------------------------------------------------------------- 111-1111111-11-----------1------1---111111-1--1-11111111-1--111111111111111111-11-11-111--1--111---11-1-111-11--------------11111111111111111---11111-11-11111111-111111111-11------1--111--111111111111111111111111111111111111111111111111111111111111111111-1-11-1----111111111111111111111111111111111111111111111111111111111111111111111111111111111111-11111111111111111-11111-211111--11-----1------------------------------1--11-----------11-1-1-1---1-11111111---1--1-111--111-----1--1-------11-1-1111-11111111111111111111111111111111111111111111111111111111111111111111111111111-1111111-111111112111-11111-------------------------111-1111111111111111111111111111--111111--11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111--111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-12-----------------1----1-1------1111-----111-11---1---111 -----1------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------1112-11--1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 247 STR:RPRED 100.0 SQ:SECSTR ccEEEcccccEETTEEEEETHHHHHHHHHTTccTTccEEEEETcTEEEEEEEEEEcccEEEEEEEEEcccccccccEEEEEEEccccTHHHHHHHHHHHHTccEEEEEEcTTccccHHHHHHHHHHHHHHHHHHHHHHHHTcccccEEcccEEGGGccccccEEEEEcTTcccccGGGccTHccGcccTccEEEEEEccTTcccHHHHHHHHHTTcEEEccccccccHHHHHHHHHHHHTGGGTcTT PSIPRED ccEEEccHHHccccEEEEcHHHHHHHHHHcccccccEEEEEEccccEEEEEEEEEEccEEEEEEEEcccccccccccEEEEEEEccccHHHHHHHHHHHccccEEEEEEEccEEcccccccHHHHHHHHHHHHHHHHHHccccccccEEEcccHHHHHHHcccccEEEEEccccccccHHHHHHHcccccccEEEEEcccccccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHHHHcc //