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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO51385.1
DDBJ      :             coproporphyrinogen III oxidase, anaerobic
Swiss-Prot:             

Homologs  Archaea  5/68 : Bacteria  832/915 : Eukaryota  63/199 : Viruses  0/175   --->[See Alignment]
c.1.28
:494 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   169->478 1oltA PDBj 1e-24 27.8 %
:RPS:PDB   150->405 3c8fA PDBj 3e-22 11.2 %
:RPS:SCOP  162->478 1oltA  c.1.28.2 * 6e-58 28.6 %
:HMM:SCOP  169->478 1oltA_ c.1.28.2 * 7.7e-74 37.6 %
:RPS:PFM   134->176 PF02621 * DUF178 9e-04 43.9 %
:RPS:PFM   178->341 PF04055 * Radical_SAM 7e-15 35.6 %
:HMM:PFM   176->347 PF04055 * Radical_SAM 6.2e-24 26.1 157/166  
:HMM:PFM   439->478 PF06969 * HemN_C 0.00076 35.3 34/118  
:BLT:SWISS 16->493 HEMZ_BACSU 4e-97 39.7 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO51385.1 GT:GENE ABO51385.1 GT:PRODUCT coproporphyrinogen III oxidase, anaerobic GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 3127560..3129044 GB:FROM 3127560 GB:TO 3129044 GB:DIRECTION + GB:PRODUCT coproporphyrinogen III oxidase, anaerobic GB:NOTE PFAM: Radical SAM domain protein SMART: Elongator protein 3/MiaB/NifB KEGG: dsy:DSY2448 hypothetical protein GB:PROTEIN_ID ABO51385.1 GB:DB_XREF GI:134053414 InterPro:IPR006638 InterPro:IPR007197 LENGTH 494 SQ:AASEQ MIIGLSNTAFEYKGTIQDIIWLFYPGAELVAEDKGDFLLQLNLSQEVEFNLWAEAQLYVNGASLAQREEGHPLIPAEVPNELKRLARMAVYKILVSYSGTTPSPWGIMTGIRPTKVVHRLLDLGWSKQNVENYLLDKYALRPDKTQLITSVTEIQRPLLLSKKQAKKLVGVYIGIPFCPSRCLYCSFPSYSIKRHRDMVDPFLKALLQEIQVIGETLRSQGLLVQSIYLGGGTPTSLNCEQLQSLLEAIQLSLKDDSTIEMTVEGGRPDTLNEDVFALLANAGVNRLSINPQSMNQKTLDIIGRAHTVEDIYRSVETARNYKFPTLNMDLIIGLPGETVQDVARTMESILQLKPENLTVHALALKRASNLKQRLAEFPLLQAEEAVAMWQETARGATALGQHPYYMYRQKQMVGNLENIGYALPGHECIYNIQMIEERQTIIGLGVGAGSKWMDPDTWTLVNEYNAKDPRQYVERLDEYIERKLHHIRELSTKQ GT:EXON 1|1-494:0| BL:SWS:NREP 1 BL:SWS:REP 16->493|HEMZ_BACSU|4e-97|39.7|476/501| BL:PDB:NREP 1 BL:PDB:REP 169->478|1oltA|1e-24|27.8|299/434| RP:PDB:NREP 1 RP:PDB:REP 150->405|3c8fA|3e-22|11.2|240/245| RP:PFM:NREP 2 RP:PFM:REP 134->176|PF02621|9e-04|43.9|41/253|DUF178| RP:PFM:REP 178->341|PF04055|7e-15|35.6|149/164|Radical_SAM| HM:PFM:NREP 2 HM:PFM:REP 176->347|PF04055|6.2e-24|26.1|157/166|Radical_SAM| HM:PFM:REP 439->478|PF06969|0.00076|35.3|34/118|HemN_C| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF04055|IPR007197| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF04055|IPR007197| RP:SCP:NREP 1 RP:SCP:REP 162->478|1oltA|6e-58|28.6|297/436|c.1.28.2| HM:SCP:REP 169->478|1oltA_|7.7e-74|37.6|298/0|c.1.28.2|1/1|Radical SAM enzymes| OP:NHOMO 1621 OP:NHOMOORG 900 OP:PATTERN ----11-----------------------------111------------------------------ 11112111111111-1111-11--111111111111-11-111111111111111111--1111212112211111111342-32222331111111--22222222222222222222222221222222222222221111121222322111111111112221322111111111111111111221122222222222222222222222222222211111111121211111111111111111111---11---------111-----1111111111111111111111111111111111111111111111123334333333334333223222253322222-442211111122232422-2222112112124221123433333233333332-1111122225111222433211222212233233323222222222221111232-----------111111111-1111-----1212222212222222233332223333334222222222222222223322223222122222222222111222211111111111111121222213221231222342222222322222222223222223322222222233333234444334543361-213321-111132223222333233322-3222333232333222223222332222233233223323233222222221-333233333333--12111111111222123332222111122222211211222222222222223222322211111111123333333333333322121211111111-121222222--------211-----------1------1---1112112112121121 ----1-1-----1------------------------------------------------------------------------------------------11--1-1212111---11---1-111191-112--1-11111111--11-11-113----111-------311-1-C111111113-11112---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 387 STR:RPRED 78.3 SQ:SECSTR ###########################################################################################GGcEEEEHHHHTcccccccccccHHHHHHHHHTHHHTTcccHHHHHHHHHcccHHHHHcccEEEEEEEEEEcTTcccEEEEEEEcccccccTTcccGGGccTTccEEEcHHHHHHHHHHHHHHGGGHHHHTcTTcEEEEEEccGGGGHHHHHHHHHHHHTcTTTHTTTccEEEEEccccccccHHHHHHHHTccEEEEEcccccHHHHHHHHccccHHHHHHHHHHHHHHTccEEEEEEEcTTTTccHHHHHHHHHHHHHHcEEEEEEEEcccccHHHHHHTTcccTTTccHHHHHHHHHHHHTTcTTTcccccHHHETTTTEEEEcccHHHcTTHHHHHEHTTTccEEccccccTTTGGGcccccccTTTccTTcHHHHHHHHHHH################ DISOP:02AL 493-495| PSIPRED cEEEEEccccHHHHHHHHHHHHHcccccccccccccEEEEEEEcccccccEEEEEEEEEccccHHHccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHcccHHHHHHHcccccccccccHHHHHcccHHHHHHHHccccccccEEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEccccccccHHHHHHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHccccEEEEEcccccHHHHHHHcccccHHHHHHHHHHHHHccccEEEEEEEEccccccHHHHHHHHHHHHHccccEEEEEEEccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHccccccccccEEcccccEEEEEcccEEEEEcccccEEEEEEEcccHHHHHHHHHHHcccccHHHccccccc //