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Desulfotomaculum reducens MI-1 (dred0)
Gene : ABO51528.1
DDBJ      :             Integrase, catalytic region
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  16/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
c.55.3
:364 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   183->331 1bisB PDBj 2e-06 13.8 %
:RPS:SCOP  183->331 1b92A  c.55.3.2 * 3e-04 12.6 %
:HMM:SCOP  174->341 1c0mA2 c.55.3.2 * 2.5e-30 23.0 %
:RPS:PFM   183->284 PF00665 * rve 5e-04 27.3 %
:HMM:PFM   179->293 PF00665 * rve 6.8e-19 26.1 115/120  
:BLT:SWISS 79->127 RIFK_PYRFU 4e-04 38.8 %
:BLT:SWISS 118->337 T904_LACLA 2e-09 22.2 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID ABO51528.1 GT:GENE ABO51528.1 GT:PRODUCT Integrase, catalytic region GT:DATABASE GIB00494CH01 GT:ORG dred0 GB:ACCESSION GIB00494CH01 GB:LOCATION 3283650..3284744 GB:FROM 3283650 GB:TO 3284744 GB:DIRECTION + GB:PRODUCT Integrase, catalytic region GB:NOTE PFAM: Integrase, catalytic region KEGG: mgm:Mmc1_2548 integrase, catalytic region GB:PROTEIN_ID ABO51528.1 GB:DB_XREF GI:134053557 InterPro:IPR001584 LENGTH 364 SQ:AASEQ MNIKSVFSFFKEWIVISIQFISTFFMTSTAKNFEIIALRSQLSLFQQQVENKKISKPRCTPVFRQLWVLLSKVFINWKSNLILVKPETVIRWHETAFKFHWKSKSKKTGRPTIPTETIKLIKKIHKENPLLSPEKIREVLISMNVINPPAPNTIAKYISYTRKPPSERQVQSWKTFLKNHSKEIWAMDFFTVPTLLFKVLYVLIIINHGTRKIEHFAVTCNPNLKWLKQQIRNATPYDHKPQYLIHDNNPVFVSKDFKTFLASSGIRSKRISKRSPWQNGIAERSIGIIRQELLNYIIPFNEKHLHRLLREYIHEYYNTHRTHQGINGKTPIPLPTYLPTKASKTKLKATPVLGGLYHTYKKVA GT:EXON 1|1-364:0| BL:SWS:NREP 2 BL:SWS:REP 79->127|RIFK_PYRFU|4e-04|38.8|49/100| BL:SWS:REP 118->337|T904_LACLA|2e-09|22.2|216/253| TM:NTM 2 TM:REGION 16->38| TM:REGION 186->208| SEG 263->275|ssgirskriskrs| RP:PDB:NREP 1 RP:PDB:REP 183->331|1bisB|2e-06|13.8|138/154| RP:PFM:NREP 1 RP:PFM:REP 183->284|PF00665|5e-04|27.3|99/116|rve| HM:PFM:NREP 1 HM:PFM:REP 179->293|PF00665|6.8e-19|26.1|115/120|rve| GO:PFM:NREP 2 GO:PFM GO:0003677|"GO:DNA binding"|PF00665|IPR001584| GO:PFM GO:0015074|"GO:DNA integration"|PF00665|IPR001584| RP:SCP:NREP 1 RP:SCP:REP 183->331|1b92A|3e-04|12.6|127/144|c.55.3.2| HM:SCP:REP 174->341|1c0mA2|2.5e-30|23.0|161/0|c.55.3.2|1/1|Ribonuclease H-like| OP:NHOMO 65 OP:NHOMOORG 16 OP:PATTERN -------------------------------------------------------------------- --1-2------------------------------------1-O-----------------1----1---------------------------------------------------------------------------4------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------4-------------------------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------------------------------------------------------------------------------------------C---4431------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 163 STR:RPRED 44.8 SQ:SECSTR #############################################################################################################################################################################ccccTTccTTEEEEEEEEEGGGTETTEEEEEEEETTTccEEEEEEccccHHHHHHHHHHHHHHccccEEEEEccccTTTccHHHHHHHHHHTcEEEccccccccHHHHHHHHHHHHHHHHHHHGGGcccHHHHHHHHHHHHHHHHHHccGGGcccccHHHHcc############################ DISOP:02AL 1-2,102-109,158-172,341-341,343-344| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHcccEEEEcccccccccccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHcccccHHHHHHHccccccccccHHccccccccEEEEEcc //