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Eggerthella lenta DSM 2243 (elen0)
Gene : ACV53998.1
DDBJ      :             DNA polymerase III, beta subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  895/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
d.131.1
:366 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->366 1vpkA PDBj 2e-40 27.1 %
:RPS:PDB   1->364 2awaB PDBj 4e-69 26.3 %
:RPS:SCOP  1->118 1jqjA1  d.131.1.1 * 4e-28 34.7 %
:RPS:SCOP  125->242 1vpkA2  d.131.1.1 * 1e-22 23.3 %
:RPS:SCOP  243->366 1vpkA3  d.131.1.1 * 2e-24 27.0 %
:HMM:SCOP  1->117 1vpkA2 d.131.1.1 * 1.5e-26 34.2 %
:HMM:SCOP  121->242 2polA2 d.131.1.1 * 3.8e-23 32.2 %
:HMM:SCOP  243->365 2polA3 d.131.1.1 * 9.2e-28 34.7 %
:RPS:PFM   1->118 PF00712 * DNA_pol3_beta 3e-23 46.6 %
:RPS:PFM   127->241 PF02767 * DNA_pol3_beta_2 3e-16 34.8 %
:RPS:PFM   244->364 PF02768 * DNA_pol3_beta_3 8e-17 30.8 %
:HMM:PFM   1->116 PF00712 * DNA_pol3_beta 8.8e-35 41.4 116/120  
:HMM:PFM   128->241 PF02767 * DNA_pol3_beta_2 2.5e-25 31.6 114/116  
:HMM:PFM   243->364 PF02768 * DNA_pol3_beta_3 1.2e-25 32.5 120/121  
:BLT:SWISS 1->364 DPO3B_STAES 3e-53 30.6 %
:REPEAT 2|2->117|125->242

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV53998.1 GT:GENE ACV53998.1 GT:PRODUCT DNA polymerase III, beta subunit GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION 3231..4331 GB:FROM 3231 GB:TO 4331 GB:DIRECTION + GB:PRODUCT DNA polymerase III, beta subunit GB:NOTE KEGG: bsu:BSU00020 DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain GB:PROTEIN_ID ACV53998.1 GB:DB_XREF GI:257473678 InterPro:IPR001001 LENGTH 366 SQ:AASEQ MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVAALIEETGKAVVPGKLFSEIVKNLPDAAVHVAAEDDSAVITCDTASFSIKTLDAEDFPGFPHVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVLITLEDTTLKMVATDSYRLAITEAELPESSAEEFQAVIAGSFLQEISSLPRSEDDLKLALAENQIVVTYHDTVFINRRLEGNFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLLGQTSSPVRFAINMASQTVQLSAVAQDVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVSTDNVFLEVQSSMKPGIFKADEGENFLYLVMPVRIA GT:EXON 1|1-366:0| BL:SWS:NREP 1 BL:SWS:REP 1->364|DPO3B_STAES|3e-53|30.6|363/377| NREPEAT 1 REPEAT 2|2->117|125->242| BL:PDB:NREP 1 BL:PDB:REP 1->366|1vpkA|2e-40|27.1|362/367| RP:PDB:NREP 1 RP:PDB:REP 1->364|2awaB|4e-69|26.3|361/375| RP:PFM:NREP 3 RP:PFM:REP 1->118|PF00712|3e-23|46.6|118/119|DNA_pol3_beta| RP:PFM:REP 127->241|PF02767|3e-16|34.8|115/116|DNA_pol3_beta_2| RP:PFM:REP 244->364|PF02768|8e-17|30.8|120/121|DNA_pol3_beta_3| HM:PFM:NREP 3 HM:PFM:REP 1->116|PF00712|8.8e-35|41.4|116/120|DNA_pol3_beta| HM:PFM:REP 128->241|PF02767|2.5e-25|31.6|114/116|DNA_pol3_beta_2| HM:PFM:REP 243->364|PF02768|1.2e-25|32.5|120/121|DNA_pol3_beta_3| GO:PFM:NREP 15 GO:PFM GO:0003677|"GO:DNA binding"|PF00712|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00712|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF00712|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF00712|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF00712|IPR001001| GO:PFM GO:0003677|"GO:DNA binding"|PF02767|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF02767|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF02767|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF02767|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF02767|IPR001001| GO:PFM GO:0003677|"GO:DNA binding"|PF02768|IPR001001| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF02768|IPR001001| GO:PFM GO:0006260|"GO:DNA replication"|PF02768|IPR001001| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF02768|IPR001001| GO:PFM GO:0009360|"GO:DNA polymerase III complex"|PF02768|IPR001001| RP:SCP:NREP 3 RP:SCP:REP 1->118|1jqjA1|4e-28|34.7|118/122|d.131.1.1| RP:SCP:REP 125->242|1vpkA2|1e-22|23.3|116/123|d.131.1.1| RP:SCP:REP 243->366|1vpkA3|2e-24|27.0|122/123|d.131.1.1| HM:SCP:REP 1->117|1vpkA2|1.5e-26|34.2|117/0|d.131.1.1|1/3|DNA clamp| HM:SCP:REP 121->242|2polA2|3.8e-23|32.2|121/0|d.131.1.1|2/3|DNA clamp| HM:SCP:REP 243->365|2polA3|9.2e-28|34.7|121/0|d.131.1.1|2/2|DNA clamp| OP:NHOMO 955 OP:NHOMOORG 896 OP:PATTERN -------------------------------------------------------------------- 1111111111111111112-11111111111111112111122221111111111111111111211222211111111111111111111111111111111121121111111111111111111111111111111111211112211111111111111111122111111111111111211111141122222232123323311111122211121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112312111111111111111111111111111111111121111111111111111111111111111111111111-111111111111111211111111111111131111111111111111111111111112111111111111111111111111112111111111111111111111111111111111111111111111111121111111111111111111111111211111-1-111-1111111111111111111111111111111111111111111111111111111111111111111111111111-1111111-11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111111111111111111111111111-11111--1111-1---1111-----1111111111111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 366 STR:RPRED 100.0 SQ:SECSTR cEEEEEHHHHHHHHHHHHTTcccccccGGGGEEEEEEcccEEEEEEEcccEEEEEEEETEEEEcEEEEEEHHHHHHHHHHccccEEEEEEETTTEEEEETTEEEEEEcccGGGccccccccccccEEEEHHHHHHHHHHHGGGccccTTcGGGGEEEEEEETTEEEEEEEcccEEEEEEEEccccccccEEEEEEHHHHHHHHHccTTccEEEEEEcccEEEEEcccEEEEEEcccccccccGGGccccccEEEEEEHHHHHHHHHHHHHHTcccccEEEEEEEETTEEEEEEEETTTEEEEEEEccEEEEccEEEEEcHHHHHHHHHTccccEEEEEEccccccEEEEEcccccEEEEEcccccc PSIPRED cEEEEEHHHHHHHHHHHHHHccccccccHHcEEEEEEEccEEEEEEEccEEEEEEEEEEEEccccEEEEEHHHHHHHHHHccccEEEEEEEccEEEEEEcccEEEEccccHHHccccccccccEEEEEEHHHHHHHHHHHEEEccccccEEEEEEEEEEEEccEEEEEEEcccEEEEEEEEccccccccEEEEEEHHHHHHHHHHcccccEEEEEEEccEEEEEEccEEEEEEcccccccccHHcccccccEEEEEEHHHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEcccccEEEEEEEEEEccccEEEEEcHHHHHHHHHHccccEEEEEEEcccccEEEEEcccccEEEEEEEEEEc //