[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Eggerthella lenta DSM 2243 (elen0)
Gene : ACV55218.1
DDBJ      :             RNA methyltransferase, TrmA family
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  727/915 : Eukaryota  148/199 : Viruses  1/175   --->[See Alignment]
b.40.4c.66.1
:461 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   18->461 2bh2A PDBj 2e-39 32.3 %
:RPS:PDB   18->461 2bh2A PDBj 3e-44 25.9 %
:RPS:SCOP  18->74 1uwvA1  b.40.4.12 * 2e-12 30.4 %
:RPS:SCOP  77->460 1uwvA2  c.66.1.40 * 5e-39 26.2 %
:HMM:SCOP  15->75 1uwvA1 b.40.4.12 * 1.4e-09 35.0 %
:HMM:SCOP  76->461 1uwvA2 c.66.1.40 * 4.4e-58 33.5 %
:RPS:PFM   260->461 PF05958 * tRNA_U5-meth_tr 3e-32 47.1 %
:HMM:PFM   279->367 PF05958 * tRNA_U5-meth_tr 6.2e-10 40.5 79/352  
:HMM:PFM   386->455 PF05958 * tRNA_U5-meth_tr 1.1e-11 37.3 67/352  
:HMM:PFM   16->67 PF01938 * TRAM 2.3e-11 28.8 52/61  
:BLT:SWISS 18->460 Y3134_GLOVI 2e-54 35.5 %
:PROS 391->422|PS01230|TRMA_1
:PROS 443->453|PS01231|TRMA_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV55218.1 GT:GENE ACV55218.1 GT:PRODUCT RNA methyltransferase, TrmA family GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION 1500771..1502156 GB:FROM 1500771 GB:TO 1502156 GB:DIRECTION + GB:PRODUCT RNA methyltransferase, TrmA family GB:NOTE TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: bha:BH0897 RNA methyltransferase GB:PROTEIN_ID ACV55218.1 GB:DB_XREF GI:257474898 InterPro:IPR001566 InterPro:IPR002792 InterPro:IPR010280 LENGTH 461 SQ:AASEQ MDETEKQKRDLGVFMEETITIERMGYGSEAVGRLESGKAVFVEGGAPGDVAALEIVEDKPTFARARIARLVKPSELRVRPRCEAGAACGGCPWQHLSYDAQLEAKRANVAAALERTAKFGRERAEELVRPCLPSKRQWGYRNKLELGAAMDERGTFQLGFHREGAHDIASPGACPLAHDAIAKAPKALRGALRFAQGSADLGIFRVGVRHSLHTGDLEVALWTSPGSFPRGHIAKTVKSAVKATSIVRVMADPGKARKIKGVETLDGKGCWEEQLGDARYLASAPSFFQVNTAQAEKLIACVIEGLGGRMGEDGPEGLDDLLIADLYAGGGTFSVPLAQAGAEVLAVEAAGSSVRDLRRNADMNRVDLEVIGGDAARELPELGGLDALVVDPPRAGLADGVVESIAAAAPERVAYVSCNPATWARDVARFESQGYRLTSVQPVDMFPQTYHVEVVSVFERL GT:EXON 1|1-461:0| BL:SWS:NREP 1 BL:SWS:REP 18->460|Y3134_GLOVI|2e-54|35.5|423/457| PROS 391->422|PS01230|TRMA_1|PDOC00945| PROS 443->453|PS01231|TRMA_2|PDOC00945| SEG 337->353|laqagaevlaveaagss| BL:PDB:NREP 1 BL:PDB:REP 18->461|2bh2A|2e-39|32.3|405/418| RP:PDB:NREP 1 RP:PDB:REP 18->461|2bh2A|3e-44|25.9|410/418| RP:PFM:NREP 1 RP:PFM:REP 260->461|PF05958|3e-32|47.1|189/259|tRNA_U5-meth_tr| HM:PFM:NREP 3 HM:PFM:REP 279->367|PF05958|6.2e-10|40.5|79/352|tRNA_U5-meth_tr| HM:PFM:REP 386->455|PF05958|1.1e-11|37.3|67/352|tRNA_U5-meth_tr| HM:PFM:REP 16->67|PF01938|2.3e-11|28.8|52/61|TRAM| GO:PFM:NREP 2 GO:PFM GO:0006396|"GO:RNA processing"|PF05958|IPR010280| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF05958|IPR010280| RP:SCP:NREP 2 RP:SCP:REP 18->74|1uwvA1|2e-12|30.4|56/60|b.40.4.12| RP:SCP:REP 77->460|1uwvA2|5e-39|26.2|351/357|c.66.1.40| HM:SCP:REP 15->75|1uwvA1|1.4e-09|35.0|60/60|b.40.4.12|1/1|Nucleic acid-binding proteins| HM:SCP:REP 76->461|1uwvA2|4.4e-58|33.5|352/358|c.66.1.40|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 1223 OP:NHOMOORG 884 OP:PATTERN ------------------------------------------------------2222221----1-- 111-111111111111-11-11--111111111111111-11-11111111-121-11----11111111111111112222-111111111-1111--111111111-1-111111111111131111111111122222111111111111111111111111111111-11----1----11-1111-1222222212222222222222222222332122222222212111111111111111111122222222232222222222331222222222222222222122222222222222222222222222221222222222222221222222232122133111111111111222111211-1111111-11111--1111--11111111111--11-11-1-111-11111111111111-1--1-1111111---------111--1-------------------------------111-11111111111111111111111111111111111111111111111111111111111-------1-111121121111111111122222222211111211-------------------------1122211112-1-2222222233322221212--11111------22121312222222222-222232222222322222233322211221222221222222212222222--1--------------1-----111111111222111111-11111112-111111211111222222222222211111111111111222221112211111111111111-111222222--------1-4------11--1-----1--------112111-111111 -1--11--1-----111--11111111111111111-1-1111111-1-11111111111111-1111-1111111111112222111-12111111-111-1-1---21212222--1--11-33-1-342--12-11-1--11--1-11--1-211111--11---112--21112171121121111112211111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- STR:NPRED 444 STR:RPRED 96.3 SQ:SECSTR #################EEEEcEEcTTcEEEEEETTTEEEEEETccTTEEEEEEEccccccEEEEEEEEEccccTTccccccTTcTTccccccTTccHHHHHHHHHHHHHHHHTccccccccEccTTcccEEEcccccccccEEEEEEEETTTTEEEEEEEcTTcccEEEccccTTccHHHHHHHHHHHHHHHTcGGGGGEEEEEEEEETTETTEEEEEEEEcccccHHHHHHHHHHHHHHTcEHHHHHTTEEEEEEccccccEEccccccEEEETTEEEEccTTccccccHHHHHHHHHHHHHHHTccTTcEHHTTTcccEEEEEccTTTTTHHHHHTTccEEEEEEccHHHHHHHHHHHHHTTcccEEEEEccTTccGGGcGGGGccccEEEEcccTTTHHHHHHTcccEEEEEEccHHHHHHHHHHHHHTTEEEEEEEEEcccTTccccEEEEEEEEc PSIPRED cccccccccccccccEEEEEEEEEcccccEEEEEEccEEEEEcccccccEEEEEEEEEcccEEEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEEEEEEEEcccccEEEEEEccccEEEEcHHHcccccHHHHHHHHHHHHHHHHccccccccEEEEEEEEEcccccEEEEEEEccccccHHHHHHHHHHcccccEEEEEEEccccccccccEEEEcccccEEEEEccEEEEEccccEEcccHHHHHHHHHHHHHHHHccHHHHHcccccccEEEEEcccccHHHHHHHHcccEEEEEEccHHHHHHHHHHHHHcccccEEEEccHHHHHHHcccccEEEEccccccccHHHHHHHHHccccEEEEEEccHHHHHHHHHHHHHccEEEEEEEEEEcccccccEEEEEEEEEc //