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Eggerthella lenta DSM 2243 (elen0)
Gene : ACV55280.1
DDBJ      :             RNA polymerase, sigma 70 subunit, RpoD subfamily
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  909/915 : Eukaryota  23/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.13
:409 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   106->408 1l9zH PDBj 1e-82 62.2 %
:RPS:PDB   103->407 3dxjF PDBj 5e-40 57.7 %
:RPS:SCOP  109->242 1sigA  a.177.1.1 * 2e-27 55.7 %
:RPS:SCOP  246->304 1iw7F1  a.4.13.1 * 1e-17 71.2 %
:RPS:SCOP  339->397 1ku3A  a.4.13.2 * 1e-13 59.3 %
:HMM:SCOP  105->245 1ku2A2 a.177.1.1 * 2e-56 59.6 %
:HMM:SCOP  248->322 1rp3A1 a.4.13.1 * 2.8e-23 45.3 %
:HMM:SCOP  305->409 1iw7F2 a.4.13.2 * 5.6e-27 45.7 %
:RPS:PFM   106->140 PF00140 * Sigma70_r1_2 3e-07 74.3 %
:RPS:PFM   175->247 PF04542 * Sigma70_r2 3e-09 46.4 %
:RPS:PFM   254->320 PF04539 * Sigma70_r3 4e-16 61.2 %
:RPS:PFM   344->395 PF04545 * Sigma70_r4 9e-07 64.6 %
:HMM:PFM   254->330 PF04539 * Sigma70_r3 1.1e-31 58.4 77/78  
:HMM:PFM   343->396 PF04545 * Sigma70_r4 7.9e-23 56.0 50/50  
:HMM:PFM   175->245 PF04542 * Sigma70_r2 5.4e-27 43.7 71/71  
:HMM:PFM   106->140 PF00140 * Sigma70_r1_2 1.2e-19 65.7 35/37  
:BLT:SWISS 106->408 RPOD_LISMO e-111 76.5 %
:PROS 199->212|PS00715|SIGMA70_1
:PROS 368->394|PS00716|SIGMA70_2
:PROS 175->182|PS00867|CPSASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV55280.1 GT:GENE ACV55280.1 GT:PRODUCT RNA polymerase, sigma 70 subunit, RpoD subfamily GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION 1575542..1576771 GB:FROM 1575542 GB:TO 1576771 GB:DIRECTION + GB:PRODUCT RNA polymerase, sigma 70 subunit, RpoD subfamily GB:NOTE TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: bha:BH1376 RNA polymerase sigma factor RpoD GB:PROTEIN_ID ACV55280.1 GB:DB_XREF GI:257474960 InterPro:IPR000943 InterPro:IPR005479 InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR014284 LENGTH 409 SQ:AASEQ MAQASSKQAQERNNAAVASIEAEDILEEDALDDEPDVVDAGDGLDDDKLESPLSDDSDDEDLLEGIPEEELKATVEVQLPKVAGKSKVRSVRKRNADASVTMLTGDPVRMYLKEIGKVPLLTAAEEIDLAMKIEAGVAAMEELEKAEDEGIELERREKRRLGRIEQVGIDAKQQLIEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLIRAVEKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVRIQRQLLQELGREPSPEEIGKEMGLPAERVREIQKISQEPVSLETPIGEEEDSQLGDFIEDDAAVVPPDAASFSMLQEQLSKVLDGLAERERKVISLRFGLEDGHPRTLEEVGREFGVTRERIRQIESKTLAKLRHPSRSSKLKDYLED GT:EXON 1|1-409:0| BL:SWS:NREP 1 BL:SWS:REP 106->408|RPOD_LISMO|e-111|76.5|272/374| PROS 199->212|PS00715|SIGMA70_1|PDOC00592| PROS 368->394|PS00716|SIGMA70_2|PDOC00592| PROS 175->182|PS00867|CPSASE_2|PDOC00676| SEG 20->64|ieaedileedalddepdvvdagdgldddklesplsddsddedlle| SEG 149->165|egielerrekrrlgrie| SEG 321->331|ddaavvppdaa| BL:PDB:NREP 1 BL:PDB:REP 106->408|1l9zH|1e-82|62.2|294/319| RP:PDB:NREP 1 RP:PDB:REP 103->407|3dxjF|5e-40|57.7|305/349| RP:PFM:NREP 4 RP:PFM:REP 106->140|PF00140|3e-07|74.3|35/36|Sigma70_r1_2| RP:PFM:REP 175->247|PF04542|3e-09|46.4|69/70|Sigma70_r2| RP:PFM:REP 254->320|PF04539|4e-16|61.2|67/78|Sigma70_r3| RP:PFM:REP 344->395|PF04545|9e-07|64.6|48/49|Sigma70_r4| HM:PFM:NREP 4 HM:PFM:REP 254->330|PF04539|1.1e-31|58.4|77/78|Sigma70_r3| HM:PFM:REP 343->396|PF04545|7.9e-23|56.0|50/50|Sigma70_r4| HM:PFM:REP 175->245|PF04542|5.4e-27|43.7|71/71|Sigma70_r2| HM:PFM:REP 106->140|PF00140|1.2e-19|65.7|35/37|Sigma70_r1_2| GO:PFM:NREP 20 GO:PFM GO:0003677|"GO:DNA binding"|PF00140|IPR009042| GO:PFM GO:0003700|"GO:transcription factor activity"|PF00140|IPR009042| GO:PFM GO:0006352|"GO:transcription initiation"|PF00140|IPR009042| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00140|IPR009042| GO:PFM GO:0016987|"GO:sigma factor activity"|PF00140|IPR009042| GO:PFM GO:0003677|"GO:DNA binding"|PF04542|IPR007627| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04542|IPR007627| GO:PFM GO:0006352|"GO:transcription initiation"|PF04542|IPR007627| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04542|IPR007627| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04542|IPR007627| GO:PFM GO:0003677|"GO:DNA binding"|PF04539|IPR007624| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04539|IPR007624| GO:PFM GO:0006352|"GO:transcription initiation"|PF04539|IPR007624| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04539|IPR007624| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04539|IPR007624| GO:PFM GO:0003677|"GO:DNA binding"|PF04545|IPR007630| GO:PFM GO:0003700|"GO:transcription factor activity"|PF04545|IPR007630| GO:PFM GO:0006352|"GO:transcription initiation"|PF04545|IPR007630| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF04545|IPR007630| GO:PFM GO:0016987|"GO:sigma factor activity"|PF04545|IPR007630| RP:SCP:NREP 3 RP:SCP:REP 109->242|1sigA|2e-27|55.7|106/305|a.177.1.1| RP:SCP:REP 246->304|1iw7F1|1e-17|71.2|59/61|a.4.13.1| RP:SCP:REP 339->397|1ku3A|1e-13|59.3|59/61|a.4.13.2| HM:SCP:REP 105->245|1ku2A2|2e-56|59.6|141/0|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 248->322|1rp3A1|2.8e-23|45.3|75/0|a.4.13.1|1/2|Sigma3 and sigma4 domains of RNA polymerase sigma factors| HM:SCP:REP 305->409|1iw7F2|5.6e-27|45.7|105/105|a.4.13.2|2/2|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 2840 OP:NHOMOORG 932 OP:PATTERN -------------------------------------------------------------------- 2144722222222233333-36222333333235557465433431112332232111114472765DDB51111111211372244411111111111111112211142222222222222211-1111111115555611155U8A7776568866687866579AB757555558555532-1132233544444445344445455444544435544132222226522222222222222222221111211211111111111111111111111111111111111111111111111111111111111111154554444445445456445333645325644433444455434465112436222433333224222232223233333333333-3333433333323223333333332223333344443332222222222222343222222222222222222222222222222222232222366668645565664555554566656552244434222322532434422334222222233334433224233333333244554444555655724111111111111111111111111155443454444435544444444444454444212544422222243444444445444444-44444343444443443343334444434444444444444444424324432444444434444223233333444422444222222222222222222222222244333333353333333332222222223555544444545442222222222222222442222222222222242111111-11111111111111111112132112111231 -------1----------------------------------------------------------------------------------------------------5-------------------------------------------------1----------------4212K122436689-64871---6 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 307 STR:RPRED 75.1 SQ:SECSTR ######################################################################################################TcccHHHHHGGGGcccccccccHHHHHHHHHHHHTccTTcccccccccccTTTHHHHHHHHHHTcHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHTTTTccTTcHHHHHHHTTcccHHHHHHHHHHHHHHHHHTTTcccGGGcccc DISOP:02AL 409-410| PSIPRED cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHccccccccccHHHHHcccccHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccHHccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHHHcccccEEccccccccccccHHEEcccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //