[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Eggerthella lenta DSM 2243 (elen0)
Gene : ACV55450.1
DDBJ      :             transcriptional regulator, AraC family
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  254/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.24.16a.4.1
:345 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   211->312 1ti9A PDBj 5e-06 21.6 %
:RPS:PDB   211->312 1bl0A PDBj 6e-20 21.6 %
:RPS:SCOP  215->312 1v4aA1  a.24.16.4 * 7e-16 8.2 %
:HMM:SCOP  211->262 1bl0A1 a.4.1.8 * 1.3e-05 30.8 %
:HMM:SCOP  265->313 1d5yA2 a.4.1.8 * 1.3e-11 42.9 %
:RPS:PFM   274->312 PF00165 * HTH_AraC 7e-05 38.5 %
:HMM:PFM   234->261 PF00165 * HTH_AraC 0.00023 28.6 28/42  
:HMM:PFM   276->312 PF00165 * HTH_AraC 3.3e-06 33.3 36/42  
:BLT:SWISS 115->314 YESS_BACSU 3e-12 29.7 %
:PROS 266->308|PS00041|HTH_ARAC_FAMILY_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV55450.1 GT:GENE ACV55450.1 GT:PRODUCT transcriptional regulator, AraC family GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION complement(1771263..1772300) GB:FROM 1771263 GB:TO 1772300 GB:DIRECTION - GB:PRODUCT transcriptional regulator, AraC family GB:NOTE PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: swi:Swit_2225 AraC family transcriptional regulator GB:PROTEIN_ID ACV55450.1 GB:DB_XREF GI:257475130 InterPro:IPR000005 LENGTH 345 SQ:AASEQ MYDRETMFSHAAQAAAETFAASLEPIGLVLADGWNGEGALFEGDGCRCEGWYWAWEARRFFSVVCCDFTLKEPLPFCFDSGGYFAVRRERHGLMPQSSVSAFLEAKPKTSSILLPKEARFSYTEIEYYDEYCQSVFGERIDKALKPLATSLKGLRNQASWDPEIAEMLGEITPREIPGPEASLLYSGIANLVMARLLRMGESLCEGVAEQDRLSIARAVSYIENNLGGAIRQKDLLEAANMGSTKFKKTFKQVTGLTVTEFVSSERIELAKRLLTDHDMSIDEVAHRCGYARATSFSALFAKSVGMPPRKWRSIAKVAFDDDPESKLLGVLASGRSCVSEAESHS GT:EXON 1|1-345:0| BL:SWS:NREP 1 BL:SWS:REP 115->314|YESS_BACSU|3e-12|29.7|195/761| PROS 266->308|PS00041|HTH_ARAC_FAMILY_1|PDOC00040| SEG 11->21|aaqaaaetfaa| BL:PDB:NREP 1 BL:PDB:REP 211->312|1ti9A|5e-06|21.6|102/129| RP:PDB:NREP 1 RP:PDB:REP 211->312|1bl0A|6e-20|21.6|102/116| RP:PFM:NREP 1 RP:PFM:REP 274->312|PF00165|7e-05|38.5|39/40|HTH_AraC| HM:PFM:NREP 2 HM:PFM:REP 234->261|PF00165|0.00023|28.6|28/42|HTH_AraC| HM:PFM:REP 276->312|PF00165|3.3e-06|33.3|36/42|HTH_AraC| GO:PFM:NREP 4 GO:PFM GO:0003700|"GO:transcription factor activity"|PF00165|IPR000005| GO:PFM GO:0005622|"GO:intracellular"|PF00165|IPR000005| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00165|IPR000005| GO:PFM GO:0043565|"GO:sequence-specific DNA binding"|PF00165|IPR000005| RP:SCP:NREP 1 RP:SCP:REP 215->312|1v4aA1|7e-16|8.2|98/151|a.24.16.4| HM:SCP:REP 211->262|1bl0A1|1.3e-05|30.8|52/54|a.4.1.8|1/2|Homeodomain-like| HM:SCP:REP 265->313|1d5yA2|1.3e-11|42.9|49/0|a.4.1.8|1/1|Homeodomain-like| OP:NHOMO 434 OP:NHOMOORG 255 OP:PATTERN -------------------------------------------------------------------- ----2---------1-----------------1----11---------------------31--1--2-1-1--------5---------1--1-------511141113----------------------------------1-511---------------1--11--------------1----------------1---11---321113----22----11111-3N---------------------------1--------------1---121------------------------11------11---111-1311322211214133111-2--1-211-----32-------22-11---1-5---------1-2-----3--3-----------1---1--1---1--4332--14313531----41----1-----------------1--------------------------------4---11--2444411----2254444413239-1----1131--------1-14------------------------------1-----1----11-----11----1-1----------------1--------1-1-----1--------------1-----------------2-1-1-1111111111-11111111111-1111111121---111211111111-1111-2111-----------------------------------1---------------------1-111-111111121--121-11----------11121-11-11233--12122---------1---------------1--------------------------------------1- -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------2------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 117 STR:RPRED 33.9 SQ:SECSTR ####################################################################################################################################################################################################cHHHHHHHTTccHHcHHHHHHHHHHHHTTTTcccccHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHTTcccHHHHHHHHHHHHcccHHHHHH################################ DISOP:02AL 344-346| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccHHccccHHHcccEEEEEcccccEEEEEEEEEEccccccccccccEEEEccccEEEccccccccccccccccEEEEEEccccEEEEccEEcHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccccHHHHHHHHcccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHccccccccccHHccccccccHHccccccc //