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Eggerthella lenta DSM 2243 (elen0)
Gene : ACV55534.1
DDBJ      :             RNA polymerase, sigma-24 subunit, ECF subfamily
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  23/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.177.1a.4.1a.4.13
:163 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->157 3dxjF PDBj 2e-10 10.8 %
:RPS:SCOP  11->80 1iw7F3  a.177.1.1 * 5e-08 15.7 %
:RPS:SCOP  104->154 1k78A1  a.4.1.5 * 1e-05 13.7 %
:HMM:SCOP  1->99 1or7A2 a.177.1.1 * 9.2e-15 29.6 %
:HMM:SCOP  94->157 1s7oA_ a.4.13.3 * 6.3e-13 35.9 %
:RPS:PFM   103->152 PF08281 * Sigma70_r4_2 1e-05 50.0 %
:HMM:PFM   101->152 PF08281 * Sigma70_r4_2 8.5e-15 48.1 52/54  
:HMM:PFM   13->81 PF04542 * Sigma70_r2 1.2e-14 37.7 69/71  
:BLT:SWISS 23->160 SIGV_BACSU 5e-08 24.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV55534.1 GT:GENE ACV55534.1 GT:PRODUCT RNA polymerase, sigma-24 subunit, ECF subfamily GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION complement(1861885..1862376) GB:FROM 1861885 GB:TO 1862376 GB:DIRECTION - GB:PRODUCT RNA polymerase, sigma-24 subunit, ECF subfamily GB:NOTE TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: bha:BH3362 RNA polymerase factor sigma C GB:PROTEIN_ID ACV55534.1 GB:DB_XREF GI:257475214 InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013249 InterPro:IPR014284 LENGTH 163 SQ:AASEQ MRKRQPDTEAQRLVQTYADLILRLGYTYLKSTHDAEDVCQNVLIKLLQTDRAFESAEHERAWIVRATANACKDVLRSARRRTSVALDAVAEAAAPEVPDSAVLEAVMELSQPFREALYLHYYEGYTAREIADMTGGTEDAVAARLSRGRKKLRALLEGADDDR GT:EXON 1|1-163:0| BL:SWS:NREP 1 BL:SWS:REP 23->160|SIGV_BACSU|5e-08|24.6|138/166| SEG 83->102|svaldavaeaaapevpdsav| RP:PDB:NREP 1 RP:PDB:REP 1->157|3dxjF|2e-10|10.8|157/349| RP:PFM:NREP 1 RP:PFM:REP 103->152|PF08281|1e-05|50.0|50/54|Sigma70_r4_2| HM:PFM:NREP 2 HM:PFM:REP 101->152|PF08281|8.5e-15|48.1|52/54|Sigma70_r4_2| HM:PFM:REP 13->81|PF04542|1.2e-14|37.7|69/71|Sigma70_r2| GO:PFM:NREP 5 GO:PFM GO:0003677|"GO:DNA binding"|PF08281|IPR013249| GO:PFM GO:0003700|"GO:transcription factor activity"|PF08281|IPR013249| GO:PFM GO:0006352|"GO:transcription initiation"|PF08281|IPR013249| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF08281|IPR013249| GO:PFM GO:0016987|"GO:sigma factor activity"|PF08281|IPR013249| RP:SCP:NREP 2 RP:SCP:REP 11->80|1iw7F3|5e-08|15.7|70/184|a.177.1.1| RP:SCP:REP 104->154|1k78A1|1e-05|13.7|51/63|a.4.1.5| HM:SCP:REP 1->99|1or7A2|9.2e-15|29.6|98/113|a.177.1.1|1/1|Sigma2 domain of RNA polymerase sigma factors| HM:SCP:REP 94->157|1s7oA_|6.3e-13|35.9|64/0|a.4.13.3|1/1|Sigma3 and sigma4 domains of RNA polymerase sigma factors| OP:NHOMO 39 OP:NHOMOORG 23 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------82-------------------------------------------------------------------------------------------------------------11----------------------------2----------1-------------------------------------------------------------------------------------------21-3-------1-1--11-11-31--------221--------------1----------------------------------------------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 157 STR:RPRED 96.3 SQ:SECSTR HHHHHHHHHHHHHHHHTHHHHHHHHGGGccccccHHHHHHHHHHHHHHHHHcccTTcccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHcTTccHHHHHHHHHHTcccccTTcccTTcccccGGGTccccccccHHHHHH###### DISOP:02AL 162-164| PSIPRED ccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHccHHHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccc //