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Eggerthella lenta DSM 2243 (elen0)
Gene : ACV55582.1
DDBJ      :             RNA modification enzyme, MiaB family
Swiss-Prot:             

Homologs  Archaea  67/68 : Bacteria  791/915 : Eukaryota  106/199 : Viruses  0/175   --->[See Alignment]
b.40.4c.1.28c.92.1
:459 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   171->346 2qgqC PDBj 2e-22 34.7 %
:RPS:PDB   90->389 3banB PDBj 2e-45 9.3 %
:RPS:SCOP  142->378 1qgoA  c.92.1.2 * 5e-35 12.3 %
:RPS:SCOP  374->451 1yezA1  b.40.4.12 * 1e-07 12.1 %
:HMM:SCOP  133->376 1oltA_ c.1.28.2 * 6.4e-58 32.9 %
:RPS:PFM   13->111 PF00919 * UPF0004 5e-12 39.1 %
:RPS:PFM   159->324 PF04055 * Radical_SAM 6e-12 36.1 %
:HMM:PFM   160->330 PF04055 * Radical_SAM 3.6e-35 35.0 157/166  
:HMM:PFM   10->112 PF00919 * UPF0004 5.5e-25 39.2 97/98  
:HMM:PFM   385->450 PF01938 * TRAM 5.6e-10 40.4 57/61  
:BLT:SWISS 9->448 MIAB_STRAW e-113 48.3 %
:PROS 159->179|PS01278|MTTASE_RADICAL

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV55582.1 GT:GENE ACV55582.1 GT:PRODUCT RNA modification enzyme, MiaB family GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION complement(1912153..1913532) GB:FROM 1912153 GB:TO 1913532 GB:DIRECTION - GB:PRODUCT RNA modification enzyme, MiaB family GB:NOTE KEGG: bcb:BCB4264_A3871 hypothetical protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; Protein of unknown function UPF0004; SMART: Elongator protein 3/MiaB/NifB GB:PROTEIN_ID ACV55582.1 GB:DB_XREF GI:257475262 InterPro:IPR002792 InterPro:IPR005839 InterPro:IPR006463 InterPro:IPR006638 InterPro:IPR007197 InterPro:IPR013848 LENGTH 459 SQ:AASEQ MHTPFTNLTFCIRTFGCQMNKHDSERIAGMLEGMGALQVDAIEDADVVAFMTCCVREAADTRLYGQVASLKNVPLRAGTPLSKRIVAVGGCIGQRDGEKLVDELKHLDVVFGTHNLGSLPRLLEAALEEGSHQVEVLDAASSFPTELPTAREHEWAAWLPITIGCNNFCSYCIVPYVRGREKSRPLEDIVAEAERYVAAGVKEITLLGQNVNSYGRDLYGSPRFAQVLDALDQTGIERLRFATSHPKDLNDEVVGRFATLRSLMPALHLPVQSGSDAVLAAMNRRYTRDHYRALVAKLRDAVPDIALSTDIIVGFPGETAKDFEDTYRLVDEVGYHQVFTFIYSKREGTPAASMDDDTPREVIQQRFDRLVDLVQQRAFEANQRDLGSTVDVLVEGASKRDERLLAGKSPKNQTVHAPAPAGVRAEDLAGSTVRVRVDEAKTWYLAGEIVDGPDAADGR GT:EXON 1|1-459:0| BL:SWS:NREP 1 BL:SWS:REP 9->448|MIAB_STRAW|e-113|48.3|433/508| PROS 159->179|PS01278|MTTASE_RADICAL|PDOC00984| BL:PDB:NREP 1 BL:PDB:REP 171->346|2qgqC|2e-22|34.7|173/263| RP:PDB:NREP 1 RP:PDB:REP 90->389|3banB|2e-45|9.3|300/349| RP:PFM:NREP 2 RP:PFM:REP 13->111|PF00919|5e-12|39.1|92/97|UPF0004| RP:PFM:REP 159->324|PF04055|6e-12|36.1|155/164|Radical_SAM| HM:PFM:NREP 3 HM:PFM:REP 160->330|PF04055|3.6e-35|35.0|157/166|Radical_SAM| HM:PFM:REP 10->112|PF00919|5.5e-25|39.2|97/98|UPF0004| HM:PFM:REP 385->450|PF01938|5.6e-10|40.4|57/61|TRAM| GO:PFM:NREP 5 GO:PFM GO:0003824|"GO:catalytic activity"|PF00919|IPR013848| GO:PFM GO:0009451|"GO:RNA modification"|PF00919|IPR013848| GO:PFM GO:0051539|"GO:4 iron, 4 sulfur cluster binding"|PF00919|IPR013848| GO:PFM GO:0003824|"GO:catalytic activity"|PF04055|IPR007197| GO:PFM GO:0051536|"GO:iron-sulfur cluster binding"|PF04055|IPR007197| RP:SCP:NREP 2 RP:SCP:REP 142->378|1qgoA|5e-35|12.3|220/257|c.92.1.2| RP:SCP:REP 374->451|1yezA1|1e-07|12.1|66/68|b.40.4.12| HM:SCP:REP 133->376|1oltA_|6.4e-58|32.9|234/0|c.1.28.2|1/1|Radical SAM enzymes| OP:NHOMO 2050 OP:NHOMOORG 964 OP:PATTERN 1122111111111111111111111111-111111111111112121221111111111111111111 2331311111111111111-111121111111111111112222211211111111111122222222222111111133331333333333233322233333333313-------22222223333333333332222222222222222222222222222222222222212222212222233333222222222222222222222222222222221-------3222222222222222222221----------------------------------------------------------------------33333333333333343333333333222332333334334333333321233212223323333332233333333333323333-3333333323212222222222223333233333333332222222222222333111222222222222222222222222221333332222222222222222222222222222222222222222222222222222222222111111122222233333333333333333333334322322233333333333333333333333333322222222212112222211122221211211111121211111122222112222222222-2222222222222222222222221122222222222222222122122221-111111111111---31111122223121122222222112222222232222222222221222211112222211122121211112222211122222222222211111133333333--------32-------------------2------3334443444222 1111112-1-11111----------------------------------------------------------------------------------------111-1314722222222221232252AR3-6261221521222222221252323111523212222142523334T444442223-253352223 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 451 STR:RPRED 98.3 SQ:SECSTR HHHHccccHHcccccEEccEEEEEccTHTccGGGcccccTTHccHHHHHHHHHHHHHHHHHHHcTTEEEEEEEEccEEEccccGHcEEcHTcTTccEEEEccccccTTccccHHHHHHHHHHHHHTTcEEEcccHHHHHTcTTHHHHHHHHHHHHHHHHHHTccEEEEcccccccccccccccccTTcccccEEccccccccccccHHHHHHHTccHHHHHHHHHHHHHHHHHHHHHTTcEEEEcccccccccTTcccccccHHHHHHHHHTcccTTEEEEEEHHHHTTcTTccHHHHHHEccEEEEETTEEEEcGGGccccHHHHHHHHHHTTcEEEEEcccccccTTcccccGGGcHHHHHHHHHHHHHHHTTccccccccccccccTTcccTTcTTccccEEEccccccHHHHHHHHTTcHHHHHHHHccHHHHHHHHHHHHHcEEcc######## PSIPRED ccccccccEEEEEEccccccHHHHHHHHHHHHHcccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHcccccEEEccccHHHHHHHHHHHHHcccccEEcccccccccccccccccccEEEEEEEccccccccEEccEEEEEccEEEccHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEEEcccccccHHHHHHHHHccccccEEEEEcccccHHHHHHHcccccHHHHHHHHHHHHHHccccEEEEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEccccccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEEcccccccEEEEEcccccEEEEEcccccccccccccEEEEEEEEEEccEEEEEEEccHHHcccc //