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Eggerthella lenta DSM 2243 (elen0)
Gene : ACV55596.1
DDBJ      :             Polyribonucleotide nucleotidyltransferase
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  882/915 : Eukaryota  87/199 : Viruses  0/175   --->[See Alignment]
a.4.9b.40.4c.1.25d.101.1d.14.1d.51.1
:741 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   16->682 1e3pA PDBj e-125 47.0 %
:RPS:PDB   2->573 1e3hA PDBj e-160 43.0 %
:RPS:PDB   554->688 2e3uA PDBj 1e-22 19.5 %
:RPS:SCOP  18->129 1e3hA2  d.14.1.4 * 6e-17 42.1 %
:RPS:SCOP  143->235 1e3hA5  d.101.1.1 * 4e-21 28.6 %
:RPS:SCOP  239->319 1e3hA1  a.4.9.1 * 2e-07 26.6 %
:RPS:SCOP  305->471 2nn6E1  d.14.1.4 * 3e-43 16.1 %
:RPS:SCOP  463->636 1l2qA  c.1.25.1 * 7e-33 17.2 %
:RPS:SCOP  618->688 1sroA  b.40.4.5 * 7e-19 52.9 %
:HMM:SCOP  1->142 1e3hA2 d.14.1.4 * 1.1e-43 48.6 %
:HMM:SCOP  143->238 1e3hA5 d.101.1.1 * 8e-26 44.7 %
:HMM:SCOP  226->326 1whuA_ a.4.9.1 * 1.4e-14 33.0 %
:HMM:SCOP  302->456 1e3hA2 d.14.1.4 * 1.5e-42 42.4 %
:HMM:SCOP  453->560 1udsA2 d.101.1.1 * 2.6e-28 40.4 %
:HMM:SCOP  540->636 1we8A_ d.51.1.1 * 1.1e-22 37.5 %
:HMM:SCOP  619->690 1go3E1 b.40.4.5 * 3.3e-20 47.9 %
:RPS:PFM   18->99 PF01138 * RNase_PH 2e-07 39.5 %
:RPS:PFM   146->211 PF03725 * RNase_PH_C 1e-06 50.0 %
:RPS:PFM   325->456 PF01138 * RNase_PH 6e-18 43.0 %
:RPS:PFM   620->688 PF00575 * S1 2e-13 50.7 %
:HMM:PFM   14->137 PF01138 * RNase_PH 1.7e-20 30.8 117/132  
:HMM:PFM   324->456 PF01138 * RNase_PH 1.9e-20 36.7 128/132  
:HMM:PFM   145->211 PF03725 * RNase_PH_C 2.2e-14 36.9 65/68  
:HMM:PFM   459->529 PF03725 * RNase_PH_C 4.5e-10 31.8 66/68  
:HMM:PFM   618->688 PF00575 * S1 1.8e-19 40.8 71/74  
:HMM:PFM   556->612 PF00013 * KH_1 5.9e-13 34.5 55/57  
:HMM:PFM   249->320 PF03726 * PNPase 7.6e-11 33.3 72/83  
:BLT:SWISS 2->698 PNP_LISMF 0.0 53.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV55596.1 GT:GENE ACV55596.1 GT:PRODUCT Polyribonucleotide nucleotidyltransferase GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION complement(1930086..1932311) GB:FROM 1930086 GB:TO 1932311 GB:DIRECTION - GB:PRODUCT Polyribonucleotide nucleotidyltransferase GB:NOTE KEGG: bcy:Bcer98_2459 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA- binding, bacterial/organelle-type; Exoribonuclease, phosphorolytic domain 2; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein GB:PROTEIN_ID ACV55596.1 GB:DB_XREF GI:257475276 InterPro:IPR001247 InterPro:IPR003029 InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR015847 InterPro:IPR015848 LENGTH 741 SQ:AASEQ MKKIVESFELYGKQYRLETGELAKQATGSVVVTQGDTTVLVTAVISKEEKDYDFFPLTVDFIEKMYAVGRIPGGYLKREARPSDKGTLTARMVDRPIRPGFADGFKREVHVVCTTLVVDSINPPDTICVMGASAALMLGAAPFDGPAACVRIGRDVETGEFIVNPTFEESENSDLELTIAGTADYISMVEAGADEISEEDMLAAMTFGQEAIAAFCEAQQRFLDRANIEPVEWPVHVADPAIAERVAPFMAEMSAALRDADKLSRMGKVEELKARIKEEQFSDEERAAWKGDIAAELKKLEKKAMRAMVIETGERADGRRPEDIRPLYIVPGYLPRVHGSGLFQRGQTQALSVCTLGMLNEWQRLDTIDPAEGKRYMHQYNFPPYCTGETGRMGAPKRREIGHGALAERALIPVLPSEDEFPYAIRVVSEVLESNGSSSMASTCGSTLALMDAGVPIKAPVSGIAMGLIKEGDDVVILSDIQGIEDFLGDMDFKVCGTAKGITALQMDNKARGLSVDILARALKQASEGRAYILDAMLETIAAPREELSEFAPRIETIHIPVDKIRDVIGSGGKVVRGIQEETGASINIEEDGTIHIAAIEGPAGDAAKAMILGIVKEPEVGETFDGEVVGIKDFGAFVKLTPGKDGLLHISRVANGRVGKVEDVLNLGDIIKVEVLEVDPKTGKISLDRLDKPDAPESSASNGERRERGDRNGGRDNRPGRSGREGNGGGNRTPRRRHDA GT:EXON 1|1-741:0| BL:SWS:NREP 1 BL:SWS:REP 2->698|PNP_LISMF|0.0|53.6|694/723| SEG 130->141|mgasaalmlgaa| SEG 294->304|aaelkklekka| SEG 702->738|sngerrergdrnggrdnrpgrsgregngggnrtprrr| BL:PDB:NREP 1 BL:PDB:REP 16->682|1e3pA|e-125|47.0|598/645| RP:PDB:NREP 2 RP:PDB:REP 2->573|1e3hA|e-160|43.0|556/585| RP:PDB:REP 554->688|2e3uA|1e-22|19.5|133/166| RP:PFM:NREP 4 RP:PFM:REP 18->99|PF01138|2e-07|39.5|76/130|RNase_PH| RP:PFM:REP 146->211|PF03725|1e-06|50.0|64/68|RNase_PH_C| RP:PFM:REP 325->456|PF01138|6e-18|43.0|128/130|RNase_PH| RP:PFM:REP 620->688|PF00575|2e-13|50.7|69/74|S1| HM:PFM:NREP 7 HM:PFM:REP 14->137|PF01138|1.7e-20|30.8|117/132|RNase_PH| HM:PFM:REP 324->456|PF01138|1.9e-20|36.7|128/132|RNase_PH| HM:PFM:REP 145->211|PF03725|2.2e-14|36.9|65/68|RNase_PH_C| HM:PFM:REP 459->529|PF03725|4.5e-10|31.8|66/68|RNase_PH_C| HM:PFM:REP 618->688|PF00575|1.8e-19|40.8|71/74|S1| HM:PFM:REP 556->612|PF00013|5.9e-13|34.5|55/57|KH_1| HM:PFM:REP 249->320|PF03726|7.6e-11|33.3|72/83|PNPase| GO:PFM:NREP 10 GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF01138|IPR001247| GO:PFM GO:0003723|"GO:RNA binding"|PF01138|IPR001247| GO:PFM GO:0006396|"GO:RNA processing"|PF01138|IPR001247| GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF03725|IPR015847| GO:PFM GO:0003723|"GO:RNA binding"|PF03725|IPR015847| GO:PFM GO:0006396|"GO:RNA processing"|PF03725|IPR015847| GO:PFM GO:0000175|"GO:3'-5'-exoribonuclease activity"|PF01138|IPR001247| GO:PFM GO:0003723|"GO:RNA binding"|PF01138|IPR001247| GO:PFM GO:0006396|"GO:RNA processing"|PF01138|IPR001247| GO:PFM GO:0003723|"GO:RNA binding"|PF00575|IPR003029| RP:SCP:NREP 6 RP:SCP:REP 18->129|1e3hA2|6e-17|42.1|112/149|d.14.1.4| RP:SCP:REP 143->235|1e3hA5|4e-21|28.6|91/111|d.101.1.1| RP:SCP:REP 239->319|1e3hA1|2e-07|26.6|79/83|a.4.9.1| RP:SCP:REP 305->471|2nn6E1|3e-43|16.1|161/181|d.14.1.4| RP:SCP:REP 463->636|1l2qA|7e-33|17.2|174/457|c.1.25.1| RP:SCP:REP 618->688|1sroA|7e-19|52.9|70/76|b.40.4.5| HM:SCP:REP 1->142|1e3hA2|1.1e-43|48.6|142/149|d.14.1.4|1/2|Ribosomal protein S5 domain 2-like| HM:SCP:REP 143->238|1e3hA5|8e-26|44.7|94/111|d.101.1.1|1/2|Ribonuclease PH domain 2-like| HM:SCP:REP 226->326|1whuA_|1.4e-14|33.0|100/0|a.4.9.1|1/1|Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3| HM:SCP:REP 302->456|1e3hA2|1.5e-42|42.4|132/149|d.14.1.4|2/2|Ribosomal protein S5 domain 2-like| HM:SCP:REP 453->560|1udsA2|2.6e-28|40.4|104/105|d.101.1.1|2/2|Ribonuclease PH domain 2-like| HM:SCP:REP 540->636|1we8A_|1.1e-22|37.5|96/0|d.51.1.1|1/1|Eukaryotic type KH-domain (KH-domain type I)| HM:SCP:REP 619->690|1go3E1|3.3e-20|47.9|71/0|b.40.4.5|1/1|Nucleic acid-binding proteins| OP:NHOMO 1439 OP:NHOMOORG 1002 OP:PATTERN 111----11111111111-----1--------1111------------11-1111111111-11---- 1231111111111111111-111111111111111111111111111111111111111111111111111111111112111111111111111121111111111111222222222222222111111111112223311121211211111111111111112111121211221211212111211234333333334333333334444333434344444444431322333323322233222323121--1111122113223221-3223333333322222222222222222222222222212222222215233333333333342333122133232121222122232122221111112111211111112222222222211111111111-11111111221112212212222222112121111121211111111111111111111111111111111111111111111111122111111111111111111111111111111211111111222112111111111111111111111211111112111112111111111111212222221111111111111111111111111111111112111211111111111111111111111-1111111111111111111111111111-1111111111111111111111111111111--1---111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112211111111111111111111122221111222222111111111111111---------------------2212221112122 ------1----------------------------------------------------------1111--1------------1-----------------------1131111-1111111112121691-13111-111111111112-11-1111---22-13311231213-12J323222113-332221111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 701 STR:RPRED 94.6 SQ:SECSTR cEEEEEcGGGcEEEEEEEEccccTTccEEEEEEETTTEEEEEEEEcccccTcccccEEEEEEEEcGGGTcccccTTcccccccHHHHHHHHHHHHHHHHHccTTccccEEEEEEEEEccTTcccHHHHHHHHHHHHHHTTcccccccEEEEEEEETETTEEEEcccHHHHTTEEEEEEEEEEcTTHHHHHTTcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHHHHHHHHHHHTTTTcTccTcHHHHHHHHHHHHHHHHHHHHHHTcccTTcccTTccccEEEEEcccccccEEEEEEETTEEEEEEEEEEGGGGcEEccccccccEEcEEEEEEccGGGGTcccccccccHHHHHHHHHHHHHHGGGcccTTTccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHTcccccccEEEEEEEEEEETEEEEEcccccHHHHHccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccTTccccccHHHHccccccccccccHHHHccGGGTccccccHHHHHHHHHHHHcTTcccccccTcccGcccccHHHHccccEEEcccccEEccccccccccccccGcccccccHHHHccTccccccccccccccTTEEEEEccTcTcccHHHH######################################## PSIPRED cccEEEEEEEccEEEEEEEEEEEEccccEEEEEEcccEEEEEEEEccccccccccEEEEEEEcccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEEEEEEccccccHHHHHHHHHHHHHHHccccccccEEEEEEEEEEEccEEEEcccHHHHHHccccEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEEEcccccccEEEEEEEcccEEEEEEEccccccHHHccccccccEEEEEEEcccccccccccccccccccHHHHHHHHHHHHHHHHccHHHcccEEEEEEEEEEEccccHHHHHHHHHHHHHHHcccHHHccccEEEEEEEEccccEEEEEccccccccccccEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHccEEEEEccccccEEEEccccEEEEEEEEEEccccccccccEEEEEEEccHHHHHHHHHHHHHHcccccccEEEEEEEEEEcccEEEEEccccEEEEEEEEccccccccHHHEEccccEEEEEEEEEEccccEEEEEEEEcccccHHHcccHHcccccccccccccccccccccccccccccccccccc //