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Eggerthella lenta DSM 2243 (elen0)
Gene : ACV55614.1
DDBJ      :             protein of unknown function DUF558
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  607/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
b.122.1c.116.1
:291 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   16->255 1vhkC PDBj 5e-20 33.3 %
:RPS:PDB   23->252 2egvA PDBj 2e-40 30.3 %
:RPS:SCOP  4->76 1vhkA1  b.122.1.2 * 2e-05 18.3 %
:RPS:SCOP  77->258 1v6zA2  c.116.1.5 * 1e-30 37.9 %
:HMM:SCOP  2->77 1nxzA1 b.122.1.2 * 2.6e-07 25.4 %
:HMM:SCOP  76->263 1nxzA2 c.116.1.5 * 1.3e-42 40.8 %
:RPS:PFM   23->250 PF04452 * Methyltrans_RNA 3e-29 42.2 %
:HMM:PFM   24->252 PF04452 * Methyltrans_RNA 9.9e-57 36.5 219/225  
:BLT:SWISS 3->255 RSME_BACSU 7e-24 31.7 %
:TM

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV55614.1 GT:GENE ACV55614.1 GT:PRODUCT protein of unknown function DUF558 GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION complement(1947247..1948122) GB:FROM 1947247 GB:TO 1948122 GB:DIRECTION - GB:PRODUCT protein of unknown function DUF558 GB:NOTE PFAM: protein of unknown function DUF558; KEGG: mxa:MXAN_1133 conserved hypothetical protein TIGR00046 GB:PROTEIN_ID ACV55614.1 GB:DB_XREF GI:257475294 InterPro:IPR006700 LENGTH 291 SQ:AASEQ MSLQHFYLHDQVLADEGAPTFPLRLSPDDAKHARVLRLAPGEHIAVVDAAQDYFECEIAAFDDAVPVVRIAQRLDDEERPLVMLVQGLAKGDKMETVIRHATELGVSAFVPMSCERSIVRLDARKAAARTQRWRAIAKSAAMQSGQRACPEVGEPMALADVCASLAHATAVLVCWEEALLDARIEKALERGLRLDRALPENARIAVVVGPEGGLSRSEADALLACNPRASLVSLGSSILRTETAGIVAPALVLHELGRMMHDAREAQERTSAHVESRREEAGDACEAGGQS GT:EXON 1|1-291:0| BL:SWS:NREP 1 BL:SWS:REP 3->255|RSME_BACSU|7e-24|31.7|243/256| TM:NTM 1 TM:REGION 157->179| BL:PDB:NREP 1 BL:PDB:REP 16->255|1vhkC|5e-20|33.3|219/240| RP:PDB:NREP 1 RP:PDB:REP 23->252|2egvA|2e-40|30.3|211/229| RP:PFM:NREP 1 RP:PFM:REP 23->250|PF04452|3e-29|42.2|218/225|Methyltrans_RNA| HM:PFM:NREP 1 HM:PFM:REP 24->252|PF04452|9.9e-57|36.5|219/225|Methyltrans_RNA| GO:PFM:NREP 2 GO:PFM GO:0006364|"GO:rRNA processing"|PF04452|IPR006700| GO:PFM GO:0008168|"GO:methyltransferase activity"|PF04452|IPR006700| RP:SCP:NREP 2 RP:SCP:REP 4->76|1vhkA1|2e-05|18.3|71/72|b.122.1.2| RP:SCP:REP 77->258|1v6zA2|1e-30|37.9|161/162|c.116.1.5| HM:SCP:REP 2->77|1nxzA1|2.6e-07|25.4|71/72|b.122.1.2|1/1|PUA domain-like| HM:SCP:REP 76->263|1nxzA2|1.3e-42|40.8|174/174|c.116.1.5|1/1|alpha/beta knot| OP:NHOMO 611 OP:NHOMOORG 609 OP:PATTERN -------------------------------------------------------------------- 111-1111---111----------11-----11----11-11-1--1-11111111-1--1-111-111111111111-11-11----------11----1-111--------------------11-11-11111111-1---11-11111--111--1---111111-1-11----1--1-111--11-111111111111111111111111111111111111111111111111111111111111111---11-1---111111111-1-111111111111111111111111111111111111111111111111111111111111111111-111111--1111111111111111-11111-2-1--1--------11--1---------------------------1----------------1---------1111111111------1-111----1-----1--1-------1---1-111--11111111111111111111111111111111111111111111111111111111111111111111111-111111--------11111112111-11111-------------------------111-1111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111-111111111111--111-1111111111111111111111111111111111-1-111111111111111111111111111111111111111111111111111111111-11-----------------1----1-1----------------------------111 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 243 STR:RPRED 83.5 SQ:SECSTR ###############HHcccEEEEEETHHHHHHHHTTccTTccEEEEETTEEEcEEEEEEEcccEEEEEEEEEccccccccEEEEEEccccTHHHHHHHHHHHHTccEEEEEEcTTccccHHHHHHHHHHHHHHHHHHHHHHHHTcccccEEcccEEGGGccccccEEEEEcTTccccTccEEEEEcccHcccGGGccTTccEEEEEEccTTcccHHHHHHHHHTTTTcEEEccccccccHHHHHHHHHHHHTGGGTc################################# PSIPRED ccccEEEccHHHcccccccccEEEEcHHHHHHEEEEEcccccEEEEEEccccEEEEEEEEEcccEEEEEEEEcccccccccEEEEEEEccccHHHHHHHHHHHccccEEEEEEEccEEccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHcccccEEEEEcccccccccccHHHHccccccccccccccEEEEEcccccccHHHHHHHHHccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHcHHHHccccc //