[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Eggerthella lenta DSM 2243 (elen0)
Gene : ACV55676.1
DDBJ      :             NusB/RsmB/TIM44
Swiss-Prot:             

Homologs  Archaea  33/68 : Bacteria  736/915 : Eukaryota  149/199 : Viruses  0/175   --->[See Alignment]
a.79.1c.66.1
:473 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   61->439 1sqgA PDBj 3e-30 31.8 %
:RPS:PDB   50->148 1baq- PDBj 6e-14 25.3 %
:RPS:PDB   169->434 3c6mC PDBj 4e-18 9.7 %
:RPS:SCOP  60->156 1tztA  a.79.1.1 * 2e-15 22.1 %
:RPS:SCOP  164->446 1ixkA  c.66.1.38 * 8e-35 25.6 %
:HMM:SCOP  28->177 1sqgA1 a.79.1.3 * 4.4e-25 34.8 %
:HMM:SCOP  160->472 1ixkA_ c.66.1.38 * 1.8e-38 31.0 %
:RPS:PFM   61->148 PF01029 * NusB 3e-10 40.9 %
:RPS:PFM   259->462 PF01189 * Nol1_Nop2_Fmu 5e-30 42.8 %
:HMM:PFM   259->436 PF01189 * Nol1_Nop2_Fmu 2.3e-28 32.4 173/283  
:HMM:PFM   29->149 PF01029 * NusB 6.1e-24 34.7 121/134  
:BLT:SWISS 56->434 RSMB_BACSU 1e-40 32.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV55676.1 GT:GENE ACV55676.1 GT:PRODUCT NusB/RsmB/TIM44 GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION complement(2016503..2017924) GB:FROM 2016503 GB:TO 2017924 GB:DIRECTION - GB:PRODUCT NusB/RsmB/TIM44 GB:NOTE PFAM: NusB/RsmB/TIM44; Fmu (Sun) domain protein; KEGG: ppd:Ppro_3242 sun protein GB:PROTEIN_ID ACV55676.1 GB:DB_XREF GI:257475356 InterPro:IPR001678 InterPro:IPR006027 LENGTH 473 SQ:AASEQ MPEARETRKPQGYAGPKNPPKKPRSKASPARLAALDVVRAVRERDAFAQDVIGTRIDRSDLSSEDRAFATKLALGVVSATGTLDEIIDRALNAPSDVKPDVRDALRVSTYEIIFLGKTPHAAVDQGVELVRSFAMSASGLANAVLRKIVLMRQAFPFGDPMRDPEALARLHAFPLWLARKLIVDLGPQEALDFMRASNEQAPLFIAVNAAKTSDEALVKAFDKLDEGLDPVSVDGVSVAGCYRVLDTRALLLPEVKRMFSQGKILVTDAASQLVAASVLPERKPASLLEVGAGRATKTILLQSDATRAYGSQLVLSTLDNHAFKTRLLLERAERYGAEVAEAFTGDALELDAVVGDRAFDEVFIDAPCSGLGTLRRHPEIRWRIKPADIVEFARVQLGMLQAAAPHVAPGGALAYATCTVTREENNGVVKAFLESEAGAGFKLAPVNGRSCVATRLAPGSPDAHFAVRFERIA GT:EXON 1|1-473:0| BL:SWS:NREP 1 BL:SWS:REP 56->434|RSMB_BACSU|1e-40|32.6|362/447| SEG 16->48|pknppkkprskasparlaaldvvravrerdafa| BL:PDB:NREP 1 BL:PDB:REP 61->439|1sqgA|3e-30|31.8|349/424| RP:PDB:NREP 2 RP:PDB:REP 50->148|1baq-|6e-14|25.3|99/139| RP:PDB:REP 169->434|3c6mC|4e-18|9.7|247/291| RP:PFM:NREP 2 RP:PFM:REP 61->148|PF01029|3e-10|40.9|88/124|NusB| RP:PFM:REP 259->462|PF01189|5e-30|42.8|187/229|Nol1_Nop2_Fmu| HM:PFM:NREP 2 HM:PFM:REP 259->436|PF01189|2.3e-28|32.4|173/283|Nol1_Nop2_Fmu| HM:PFM:REP 29->149|PF01029|6.1e-24|34.7|121/134|NusB| GO:PFM:NREP 2 GO:PFM GO:0003723|"GO:RNA binding"|PF01029|IPR006027| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01029|IPR006027| RP:SCP:NREP 2 RP:SCP:REP 60->156|1tztA|2e-15|22.1|95/141|a.79.1.1| RP:SCP:REP 164->446|1ixkA|8e-35|25.6|258/305|c.66.1.38| HM:SCP:REP 28->177|1sqgA1|4.4e-25|34.8|138/140|a.79.1.3|1/1|NusB-like| HM:SCP:REP 160->472|1ixkA_|1.8e-38|31.0|284/0|c.66.1.38|1/1|S-adenosyl-L-methionine-dependent methyltransferases| OP:NHOMO 1414 OP:NHOMOORG 918 OP:PATTERN 2211252111111111-------31--111-1----------------1----75545453---12-- 111--11111111111111-11--1111111--1111--11111--11111-111111--11111111111-------1111--------11--1----1111111111-1111111-111111111111111121----------11111111111111111111-111111111111111111-2211-221111111111111111111111111221111111111123111111111111111111111222222112111222211111-1112222222222222222222222222222222222222222222111111111111111111111111211112121111121111112221-1111-222222222222222222222222222122222-2222222222222222222222223321222212112222222222211221222------------------------------222222222222222222222222222222222222222222222222222222122222222222222222222211111211111111111111211133334-11-------------------------11332111111214544443444444434444--1111-------22221222222222222-2222222222222222222222221112222222222222222222221221-111111111111--11111111111111111111-11111-1111111111111112111111111111111111--------122212222222233111111111111111-2----------------------1---1--------1----------111-111-31 1111111-4111111111-1111-1-1111111111-1111111-11-111111--111---11111111--1-1-111111111111-1111-1111121-1111-361411212----111163--13D2-21-1-----231-------12-21-1---11111211---21-111A2231-22231321121111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 424 STR:RPRED 89.6 SQ:SECSTR ################################################HHHHHHHHHcccccccccTHHHHHHHHTcccHHHHHHHTccccccccccccTHHHHHHHHHHHTTccccccTTHHHHHHHHHHHHccccccHHHHHHHHHHHHHHTTcEEEGGGGTEEEEcEEEEEEccEEEEEEccHHHHHHHHHHHHHTTcccEEccccccccccccccccccccccEEEEEEEEEccccEEEEEEEEccccTTEEHETTTEEEEEETTEEEEETTcHHHHHTHTTTTTccccTTcEEEEEEcTHHHTcccEEEEEEEcccHHHHHHHHHHcHHHHTTTTcccccccEEEEcccHHTHHHHHHHHTTccEEEEEEEcccccccGcGGccccHHHHHHHHHHHHHHTEEEEEEEEEEEEETTcHHHHHHHHHHHTTcTTTEcTTcccccccccTTGGGcEEEccEEEEEEEEc# PSIPRED ccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccHHHccccHHHHHHHHHHccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHccccccccccccEEcccccccccccccccccccHHHHccEEEEEcHHHHHHHHHHcccccccEEEEEccccHHHHHHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHccccEEEEEEccccccccccccccccEEEEcccccccccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccHHccHHHHHHHHHHcccccEEEccccccccccEEEccccccEEEEEEEEEcc //