[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Eggerthella lenta DSM 2243 (elen0)
Gene : ACV55938.1
DDBJ      :             CRISPR-associated protein Cas1
Swiss-Prot:             

Homologs  Archaea  39/68 : Bacteria  171/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
a.128.1
:343 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   36->313 2yzsB PDBj 2e-13 23.1 %
:RPS:SCOP  17->102 1dgpA  a.128.1.4 * 4e-04 17.6 %
:RPS:PFM   8->332 PF01867 * Cas_Cas1 3e-61 44.9 %
:HMM:PFM   7->333 PF01867 * Cas_Cas1 3.2e-102 43.2 315/316  
:BLT:SWISS 34->342 Y378_METJA 1e-21 26.4 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV55938.1 GT:GENE ACV55938.1 GT:PRODUCT CRISPR-associated protein Cas1 GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION complement(2312845..2313876) GB:FROM 2312845 GB:TO 2313876 GB:DIRECTION - GB:PRODUCT CRISPR-associated protein Cas1 GB:NOTE TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: bha:BH0341 hypothetical protein GB:PROTEIN_ID ACV55938.1 GB:DB_XREF GI:257475618 InterPro:IPR002729 LENGTH 343 SQ:AASEQ MRHLLNTLYVFTEDAYLMLDGENVVVRRDGAELGRVPLHTLEGILCFSYRGASPALMGACVERGVGLSFFDRKGRFLAGAYGEQRGNVLLRKTQYAWSEETEKSLAIARNFIVGKLYNGRWVLERAVRDHGLRIDTGSVKAASMRLDGSLRSAAECETMDSLRGIEGDAAAEYFGVFDELVLRDKETFRFTGRARRPPTDAMNAMLSLFYTVLAFDCASALEGVGLDPFVGFMHADRPGRRSLALDLMEELRPVFVDRFVLSALNNRVVSSKDFEKRESGEVRLGDEGRRALFGAWQERKKETITHPFLKEKIPRGLVPHVQALLLARCLRGDLDGYPPFLWK GT:EXON 1|1-343:0| BL:SWS:NREP 1 BL:SWS:REP 34->342|Y378_METJA|1e-21|26.4|288/322| BL:PDB:NREP 1 BL:PDB:REP 36->313|2yzsB|2e-13|23.1|247/307| RP:PFM:NREP 1 RP:PFM:REP 8->332|PF01867|3e-61|44.9|312/315|Cas_Cas1| HM:PFM:NREP 1 HM:PFM:REP 7->333|PF01867|3.2e-102|43.2|315/316|Cas_Cas1| RP:SCP:NREP 1 RP:SCP:REP 17->102|1dgpA|4e-04|17.6|85/290|a.128.1.4| OP:NHOMO 294 OP:NHOMOORG 210 OP:PATTERN --11-1-1-11---11--1---121--1-121221111-1--2--1-2141221-12-1-12-1-1-- 1----------------11-1-----11111----------11------------------1----1----1111-----1-11-1111----111-----------------------------11133-1121-23333---41-233111-1--------33--131--------------1-1221-11----------------11-------1----1------------------------------------1-1--------------------1-1-3------------1----112111-11--111----22-------------11111----22----1121253241-121113-12-3----------------1-----------------------------------------------------1------------11---13-------------------------------------------------------------------------1-------1----1-1--1--------22-1----1------1-111--1--11-------2221-111-----------------1----------------------------------------12---------------------------------------------------------------------------------------------------1--1-1-----112-------------------11-------------1--------1-----------------1--1----111------1-----21------------------------------------3113211111--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 259 STR:RPRED 75.5 SQ:SECSTR #####################EccccEEE######EcTTTccEEEEcccEEccHHHHHHHHHHTccEEEEcTTccEEEEEccccccHHHHHHHHHHH##cHHHHHHHHHHHHHHHHHHHHHHHc###################cccHHHHHHHHHcccHHHH#HHHHHHHHHHHHHHHHHHcccccc#HHHcccccccccHHHHHHHHHHHHHHHHHHHHHHTccccTTccccc##cccccHHHHHHHHHHHHHHTHHHHHHHHHTTcccGGGEEEETT##EEEcHHHHHHHHHHHHHHHHcEEEEGGGTEEE############################## PSIPRED cccccEEEEEEccccEEEEEccEEEEEEccEEEEEEcccccEEEEEcccccccHHHHHHHHHcccEEEEEccccEEEEEEcccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccHHHccEEcccEEEEcHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccccccccc //