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Eggerthella lenta DSM 2243 (elen0)
Gene : ACV55978.1
DDBJ      :             DNA polymerase I
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  907/915 : Eukaryota  96/199 : Viruses  24/175   --->[See Alignment]
a.60.7c.120.1c.55.3e.8.1f.55.1
:875 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   60->227 1ut5B PDBj 6e-13 36.0 %
:BLT:PDB   460->874 1u4bA PDBj e-113 49.4 %
:RPS:PDB   1->875 1bgxT PDBj e-168 39.3 %
:RPS:SCOP  3->170 1exnA2  c.120.1.2 * 1e-33 23.2 %
:RPS:SCOP  174->274 1exnA1  a.60.7.1 * 2e-27 19.8 %
:RPS:SCOP  310->373 2axtB1  f.55.1.1 * 4e-04 38.7 %
:RPS:SCOP  468->875 1bgxT4  e.8.1.1 * e-138 47.4 %
:HMM:SCOP  1->171 1bgxT2 c.120.1.2 * 2.4e-52 42.7 %
:HMM:SCOP  171->274 1xo1A1 a.60.7.1 * 1.4e-36 50.0 %
:HMM:SCOP  406->468 2hhvA1 c.55.3.5 * 0.00045 33.3 %
:HMM:SCOP  469->875 2hhvA2 e.8.1.1 * 1.2e-151 56.3 %
:RPS:PFM   4->170 PF02739 * 5_3_exonuc_N 2e-40 45.7 %
:RPS:PFM   172->257 PF01367 * 5_3_exonuc 1e-26 61.6 %
:RPS:PFM   517->871 PF00476 * DNA_pol_A e-125 59.8 %
:HMM:PFM   496->874 PF00476 * DNA_pol_A 1.9e-127 48.1 378/383  
:HMM:PFM   3->170 PF02739 * 5_3_exonuc_N 9.7e-54 42.3 168/169  
:HMM:PFM   172->270 PF01367 * 5_3_exonuc 5.7e-34 48.5 99/101  
:BLT:SWISS 3->874 DPO1_BACSU e-175 41.1 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV55978.1 GT:GENE ACV55978.1 GT:PRODUCT DNA polymerase I GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION complement(2359599..2362226) GB:FROM 2359599 GB:TO 2362226 GB:DIRECTION - GB:PRODUCT DNA polymerase I GB:NOTE KEGG: bha:BH3153 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; Helix-hairpin-helix domain protein class 2 GB:PROTEIN_ID ACV55978.1 GB:DB_XREF GI:257475658 InterPro:IPR001098 InterPro:IPR002298 InterPro:IPR002421 InterPro:IPR008918 LENGTH 875 SQ:AASEQ MPKKIAVIDGNSLMHRAYHAVPQTMNAPDGRPTNAVFGFVAMLLKFIDIANPDALICAFDAGRPAFRMEALEQYKAQRPPMDDDLKVQFPIVEELLEAMNVPVVRIKGWEGDDVLGTIAARDEELGYETLLVTGDKDAYQLATDKTRIVTTKKGITDVAIYGPAEVLERYGVRPDQFIDFLGLKGDSSDNIPGVPGIGDKTAAKLLQTYGNLEGIYEHVDDLKGKQKEKIVDNKDMAYLSREVATIVRDLDFPLDLEACSFPSFDSDKVTEAFKSVQFNAHLSRVLKLVGKELEKKAAPLVVEPVVSGPEAQALVDAAIARGETVGVAFIEPEQVSLFNAGLHGAVNTSEGTAVFEDDEGREAFARIVRAGSFAALDVKREVHRIYPADTAEAALVEDAELMGMRAFDLGLAGYVLNSSVSEYSFDALLDAYYGGVLPETKDEAGAVAAQAAAARMLVGPLTDALGRDESKRAYFDIDLPLVAVLAIVERTGAAVDCDRLAELGATTQAELDELRARIIEIAGEEFNLDSPKQLAHILFEVLGLRTLRKNQRGYSTDAAVLKELSNDHELPALVLRYRELAKIKSTYIDALPRMRADDGRVHTSFNETVTTTGRLSSSEPNLQNIPVRTEFGRQIRECFVPLEEGHAFLSADYSQIELRLLAHLSNDEHLVAAFCSGADFHAATASRVFGLPVEDVSPELRSRAKAVNFGIVYGQQAFGLSQSLGIPFGEAKEMIERYFEAYPGVRAYLDRTIAEAKEKGYAETMFGRKRHIPELKAANATQRGFGERTAMNHPMQGSAADIIKLAMTEVQRRIMERGFEAKLLLQVHDELDFSVPEGEIEELSAIVKDVMEHIVDLRVPLDVDVSYADNWAEAH GT:EXON 1|1-875:0| BL:SWS:NREP 1 BL:SWS:REP 3->874|DPO1_BACSU|e-175|41.1|855/880| SEG 285->296|vlklvgkelekk| SEG 444->454|agavaaqaaaa| BL:PDB:NREP 2 BL:PDB:REP 60->227|1ut5B|6e-13|36.0|161/272| BL:PDB:REP 460->874|1u4bA|e-113|49.4|415/580| RP:PDB:NREP 1 RP:PDB:REP 1->875|1bgxT|e-168|39.3|807/828| RP:PFM:NREP 3 RP:PFM:REP 4->170|PF02739|2e-40|45.7|164/165|5_3_exonuc_N| RP:PFM:REP 172->257|PF01367|1e-26|61.6|86/100|5_3_exonuc| RP:PFM:REP 517->871|PF00476|e-125|59.8|353/360|DNA_pol_A| HM:PFM:NREP 3 HM:PFM:REP 496->874|PF00476|1.9e-127|48.1|378/383|DNA_pol_A| HM:PFM:REP 3->170|PF02739|9.7e-54|42.3|168/169|5_3_exonuc_N| HM:PFM:REP 172->270|PF01367|5.7e-34|48.5|99/101|5_3_exonuc| GO:PFM:NREP 7 GO:PFM GO:0003677|"GO:DNA binding"|PF02739|IPR020046| GO:PFM GO:0008409|"GO:5'-3' exonuclease activity"|PF02739|IPR020046| GO:PFM GO:0003677|"GO:DNA binding"|PF01367|IPR020047| GO:PFM GO:0008409|"GO:5'-3' exonuclease activity"|PF01367|IPR020047| GO:PFM GO:0003677|"GO:DNA binding"|PF00476|IPR001098| GO:PFM GO:0003887|"GO:DNA-directed DNA polymerase activity"|PF00476|IPR001098| GO:PFM GO:0006260|"GO:DNA replication"|PF00476|IPR001098| RP:SCP:NREP 4 RP:SCP:REP 3->170|1exnA2|1e-33|23.2|155/166|c.120.1.2| RP:SCP:REP 174->274|1exnA1|2e-27|19.8|101/105|a.60.7.1| RP:SCP:REP 310->373|2axtB1|4e-04|38.7|62/488|f.55.1.1| RP:SCP:REP 468->875|1bgxT4|e-138|47.4|401/406|e.8.1.1| HM:SCP:REP 1->171|1bgxT2|2.4e-52|42.7|164/173|c.120.1.2|1/1|PIN domain-like| HM:SCP:REP 171->274|1xo1A1|1.4e-36|50.0|104/0|a.60.7.1|1/1|5' to 3' exonuclease, C-terminal subdomain| HM:SCP:REP 406->468|2hhvA1|0.00045|33.3|63/0|c.55.3.5|1/1|Ribonuclease H-like| HM:SCP:REP 469->875|2hhvA2|1.2e-151|56.3|407/0|e.8.1.1|1/1|DNA/RNA polymerases| OP:NHOMO 1518 OP:NHOMOORG 1027 OP:PATTERN -------------------------------------------------------------------- 1211211111111122222-22112222222222222223222222121121222121112231232222111111111111222222111111111--1111111111111111111111111111111111111111111111112111111111111111111111111111111111112111111112222222332222222222222222321132142222322222222222222222222222111111112111111121111111111111111111111111111111111211111111111111111111112111121111111221111112112212122212111111111111111111111111111111111111111111111111-111131111111111111111111121111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111121111112112211111111111111111111111111111211111222111232122122111111111111111111111111111112221122112222222222222222222221-1111211111122222222221222222-22222222222222222222222222222222222222222222222222221222222222222111111111111111112111111111111111111111111111111111111111111111111111111222222222222222222222222111111111111111111111111111112-11211111111211111111111111111111 23--431-E66---1---------------------------------------------------------------------------------------------42511222-2121222572516G2-4251112212211221122-72131212112212111311312244K4445364A7-652332111 ------11----------------------------------------1-----11-----1-1211111-------------------11-----1-------1---------1------1----------------1----------1-1--------2-------1------ STR:NPRED 860 STR:RPRED 98.3 SQ:SECSTR ccTTcccccccTHHHHTTcccTTccccTccccccccTTHHHHHHHGGGHTccccccccccccccccccGGGGTTTcccccccTTcTTGGGTHHHHHHHTTccccccccccHHHHHHHHHHHHHHHTcccccccccTTccTTccTTcccccccccccEcEEcccTTHHHHTcccGGGTTTTTTccccccccccccccccccTTTTTGGGTTcccccccccccccTTTcHHHHcccccTTcGGGcccccccccccccccccccccccHHHHHHHHTTTTcccTTcccccccccccEEEccccccccEEEccccccccEEEEcTTcccEEEcccccTTTccccEEEcccccEEEEEcEEccEEEccccHH#####HHHHHcccccc##########TTHHHHHHHcHHHHTccccHHHHcTTGccccTTHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHTHHHTcHHHHHHHHTTHHHHHHHHHHHHHHcccccTTTHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHTTTTTTccccccccccccccGGGTcTTTTGGGTccTTHHHHTHHHHccccTTccccTTTcccTTcccccEEEcccccccccEEEcccTTccccccTTTTTTGGGcccccccccEEEEEEccHHHHHHHHTTTcTTHHHHHHHTccHHHHHHHHHHTccTTcccTTHHHHHHHHHHHTTccccHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHTHHHHTTcccccccccccccGGGccccHHHHHHHHHHHTTHHHHTHHHHHHHTHHHHHHHHHHHHHHTcEEEEEETTEEEEEccHHTHHHHHHHHHHHHHccccccccccEEccEEccHHHHc DISOP:02AL 875-876| PSIPRED cccEEEEEEccHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHcccEEEEccccHHHHHHHHHHHHHHccccEEEEcccHHHHHHccccEEEEEcccccccEEEEcHHHHHHHccccHHHHHHHHHHHccccccccccccccHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHccHHHHHHcHHHHEEcccccccccHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccHHHccccccHHHHHHHHHHHHcccEEEEEccccccccccEEEEEEcccccEEEcccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEcccccccccEEccccHHccccccHHHHHHHHHccccccccEEEEEEcccHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHccccHHHccHHHHHHHHHHHHHHHHcccHHHHHHHccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHcccEEcccccEEEccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEccEEEEEccHHHHHHHHHHHHHHHHccEEccccEEEEEEEcccHHHHc //