[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Eggerthella lenta DSM 2243 (elen0)
Gene : ACV56605.1
DDBJ      :             ApbE family lipoprotein
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  498/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
d.96.2
:326 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   66->267 1vrmA PDBj 9e-28 34.5 %
:RPS:SCOP  28->322 1vrmA1  d.96.2.1 * 5e-67 26.4 %
:HMM:SCOP  25->321 1vrmA1 d.96.2.1 * 4e-86 40.5 %
:RPS:PFM   64->304 PF02424 * ApbE 4e-49 47.0 %
:HMM:PFM   62->316 PF02424 * ApbE 9e-80 41.4 249/252  
:BLT:SWISS 87->326 APBE_TREPA 7e-42 41.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV56605.1 GT:GENE ACV56605.1 GT:PRODUCT ApbE family lipoprotein GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION 3073588..3074568 GB:FROM 3073588 GB:TO 3074568 GB:DIRECTION + GB:PRODUCT ApbE family lipoprotein GB:NOTE PFAM: ApbE family lipoprotein; KEGG: scl:sce8631 putative thiamine biosynthesis lipoprotein ApbE GB:PROTEIN_ID ACV56605.1 GB:DB_XREF GI:257476285 InterPro:IPR003374 LENGTH 326 SQ:AASEQ MEYRDAYDPIPLEDVHETHGPNDAGMMTHQFYAFNTIITLQAYADAAQCAPAFDAARGASRAFERRLSRTLPHSDISRLNAAAGKRVAVHDDTAELLRAAIGYCADSEGLFDVTVGSAVRLWNFHEGTVPERADVERALTHVDWRALRVSEAGEPGGSWAQLADPQAAVDVGGIAKGWIADRLSAVLAEHGLDSFVVNLGGNVMAHGQKPDGSPWRVGLQDPRDKGSIVGAVTVRDASAVTSGVYERCFERDGVFYHHILDPKTGFPVETDAAGATVVARRSIDAEGYSTTLLALGIERGLAFARERDAILGAYFVDRDGKVAGIA GT:EXON 1|1-326:0| BL:SWS:NREP 1 BL:SWS:REP 87->326|APBE_TREPA|7e-42|41.4|239/362| SEG 42->56|ayadaaqcapafdaa| BL:PDB:NREP 1 BL:PDB:REP 66->267|1vrmA|9e-28|34.5|194/304| RP:PFM:NREP 1 RP:PFM:REP 64->304|PF02424|4e-49|47.0|236/253|ApbE| HM:PFM:NREP 1 HM:PFM:REP 62->316|PF02424|9e-80|41.4|249/252|ApbE| GO:PFM:NREP 1 GO:PFM GO:0009228|"GO:thiamin biosynthetic process"|PF02424|IPR003374| RP:SCP:NREP 1 RP:SCP:REP 28->322|1vrmA1|5e-67|26.4|288/309|d.96.2.1| HM:SCP:REP 25->321|1vrmA1|4e-86|40.5|289/0|d.96.2.1|1/1|ApbE-like| OP:NHOMO 660 OP:NHOMOORG 502 OP:PATTERN -------------------------------------------------11----------------- 1-3-1-----------------------------------1121------------------1-1--1----------1232---1--1111-2111---131123-4-11-11-1-1111111111-1-112-21111111111-------------------------------------------11-2---------------------------------11111111----------------11--21-144-1111331133-112-122211121-11111111111111111111111111111221112221112251111111-1-2111122-12111121--22---121--1111-1-1-31111-----1-1-111212-1222222121221-11311211-1---------1---1-211-2-11211-11-------------12---------------------------------1-1-1-12-------2111----222212---1223--11222-2212-1--111111--111111111--211-11211111-311-----1---1-1111-111------------------------1--222124212112222213422223423242--12112-1----11221221111111111-1111111111111111111222221111111111111111111211111111-111111111111---2---------22213111111111111111-------1-2121111111-111211111---------1111111111211111111111---11111111--------------111-------------------------1111111111-11 --------2----------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 251 STR:RPRED 77.0 SQ:SECSTR #################################################################HTccccTTcHHHHHHTcccccEEccHHHHHHHHHHHHHHHHTTTcccTTTHHHHHHHcGGGcccccHHHHHHHHTTccGGGEEEETTTccccEEEEEEcTTcccccTTTHHHHHHHHHHHHHHHHcTTcEEEEETTEEEEEEccTTTccEEEEEEcTTccccEEEEEEEcccEEEEEETTccEEEETTEEEEccccTTTcccccccEEEEEEEEccHHHHHHHHHHHH#HcHHHHHHHHHHHTc###EEEEEEcc###### DISOP:02AL 326-327| PSIPRED cccccccccccccccccccccccHHHHHHHHHHcccEEEEEEEccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHcccccEEccHHHHHHHHHHHHHHHHHccccccHHHHHHHHccccccccccHHHHHHHHHccccHHEEEcccccccccEEEEEccccEEEcccHHHHHHHHHHHHHHHHccccEEEEEcccEEEEEEcccccccEEEEEEccccccccEEEEEEcccEEEEccccccEEEEccEEEEEEEcccccccccccEEEEEEEccccHHHHHHHHHHHHccHHHHHHHHHHccccEEEEEEEccccEEEcc //