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Eggerthella lenta DSM 2243 (elen0)
Gene : ACV56751.1
DDBJ      :             DNA-directed RNA polymerase, alpha subunit
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  911/915 : Eukaryota  11/199 : Viruses  0/175   --->[See Alignment]
a.60.3d.181.1
:316 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   7->224 1ynjB PDBj 9e-51 46.5 %
:BLT:PDB   245->315 3gfkB PDBj 7e-17 52.1 %
:RPS:PDB   3->227 3dxjB PDBj 3e-59 44.6 %
:RPS:PDB   248->315 1doqA PDBj 2e-21 42.6 %
:RPS:SCOP  48->171 1bdfA2  d.181.1.1 * 2e-32 38.3 %
:RPS:SCOP  248->315 1doqA  a.60.3.1 * 7e-22 42.6 %
:HMM:SCOP  48->171 1i6vA2 d.181.1.1 * 3e-38 43.9 %
:HMM:SCOP  249->315 1cooA_ a.60.3.1 * 3.5e-21 50.7 %
:RPS:PFM   23->217 PF01193 * RNA_pol_L 5e-34 44.7 %
:RPS:PFM   245->309 PF03118 * RNA_pol_A_CTD 7e-17 58.5 %
:HMM:PFM   247->307 PF03118 * RNA_pol_A_CTD 7.1e-31 59.0 61/67  
:HMM:PFM   53->152 PF01000 * RNA_pol_A_bac 9e-21 28.3 99/111  
:BLT:SWISS 1->306 RPOA_MOOTA 3e-81 50.7 %

SeqInfo AminoSeq See neighboring genes
Links DAD Abbreviations Back to title page
GT:ID ACV56751.1 GT:GENE ACV56751.1 GT:PRODUCT DNA-directed RNA polymerase, alpha subunit GT:DATABASE GIB01015CH01 GT:ORG elen0 GB:ACCESSION GIB01015CH01 GB:LOCATION complement(3253606..3254556) GB:FROM 3253606 GB:TO 3254556 GB:DIRECTION - GB:PRODUCT DNA-directed RNA polymerase, alpha subunit GB:NOTE KEGG: bsu:BSU01430 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerisation; SMART: RNA polymerase RpoA/D/Rpb3-type GB:PROTEIN_ID ACV56751.1 GB:DB_XREF GI:257476431 InterPro:IPR011260 InterPro:IPR011261 InterPro:IPR011262 InterPro:IPR011263 InterPro:IPR011773 LENGTH 316 SQ:AASEQ MTEFMRPTVTTEEVNDTVARFIVEPLERGYGYTLGNCMRRVLLSSLDGAKATAIQIEGVQHEFTTAEGVIEDITDIVLNVKGLVFSALNDDIEEATAHVSAEGPCTVTGADLDIPTEFTLVNPEHVIATVADGGQLDMTVRIGVGRGYVSAERNKRTEDPIGVIHVDSLFSPVRRCTLNVTDTRVGQRTDYDKLVLEVETDGSITPTEAVCRASNIINQYMGAFLSLSDVVDEEEGEIPSIFAPEGQESNAELDKQIEDLDLSVRSYNCLKRAGIHSVRQLVEFSENDLLNIRNFGAKSIEEVKDKLISMDLNLKL GT:EXON 1|1-316:0| BL:SWS:NREP 1 BL:SWS:REP 1->306|RPOA_MOOTA|3e-81|50.7|300/313| BL:PDB:NREP 2 BL:PDB:REP 7->224|1ynjB|9e-51|46.5|217/225| BL:PDB:REP 245->315|3gfkB|7e-17|52.1|71/76| RP:PDB:NREP 2 RP:PDB:REP 3->227|3dxjB|3e-59|44.6|224/243| RP:PDB:REP 248->315|1doqA|2e-21|42.6|68/69| RP:PFM:NREP 2 RP:PFM:REP 23->217|PF01193|5e-34|44.7|190/207|RNA_pol_L| RP:PFM:REP 245->309|PF03118|7e-17|58.5|65/67|RNA_pol_A_CTD| HM:PFM:NREP 2 HM:PFM:REP 247->307|PF03118|7.1e-31|59.0|61/67|RNA_pol_A_CTD| HM:PFM:REP 53->152|PF01000|9e-21|28.3|99/111|RNA_pol_A_bac| GO:PFM:NREP 6 GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF01193|IPR011261| GO:PFM GO:0006350|"GO:transcription"|PF01193|IPR011261| GO:PFM GO:0046983|"GO:protein dimerization activity"|PF01193|IPR011261| GO:PFM GO:0003677|"GO:DNA binding"|PF03118|IPR011260| GO:PFM GO:0003899|"GO:DNA-directed RNA polymerase activity"|PF03118|IPR011260| GO:PFM GO:0006350|"GO:transcription"|PF03118|IPR011260| RP:SCP:NREP 2 RP:SCP:REP 48->171|1bdfA2|2e-32|38.3|120/121|d.181.1.1| RP:SCP:REP 248->315|1doqA|7e-22|42.6|68/69|a.60.3.1| HM:SCP:REP 48->171|1i6vA2|3e-38|43.9|123/0|d.181.1.1|1/1|Insert subdomain of RNA polymerase alpha subunit| HM:SCP:REP 249->315|1cooA_|3.5e-21|50.7|67/0|a.60.3.1|1/1|C-terminal domain of RNA polymerase alpha subunit| OP:NHOMO 942 OP:NHOMOORG 922 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11111111111111111111111111111111111111111111111211111111111111111111111111111111111111111111111111111111111111111111222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111211111111111111111111-1111111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112222222221111111111111111111111111111111111112111111111111111111-11111111111111111111111111111111 22------2-----1-----------------------------------------------------------------------------------------------------------------------------------------------1----------------1--------1211---1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 315 STR:RPRED 99.7 SQ:SECSTR ccccccccccEEEETTTEEEEEEEEEcTTHHHHHHHHHHHHHTTcccEEEEEEEEEcccccTTcccTTccccHHHHHHHHHTccEEEccTTccEEEEEEcccccEEEEcTTccccccEEEccTTcEEEEEcccccccEEEEEEEEcccccTTTcccccccTTcEEcccccccEEEEEEEEEEEcccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHGGGGcccccHTTccEEEEEEEccGGcEcccccccccHHHHTccHHHHHHHHHTTcccHHHHHHccHHHHTTcTTccHHHHHHHHHHHHHHccccc# DISOP:02AL 316-317| PSIPRED cccccccEEEEEcccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccEEEEEEEccccccccccccccccHHHHHHHHcccEEEEccccccEEEEEEEEEccEEEEEHHEEcccccEEEccccEEEEEccccEEEEEEEEEEccccEEccccccccccccEEEEccccccEEEEEEEEEEcccccccccEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHcccHHHccccHHHHHHHHHcccccHHHHHHccHHHHHHccccccccHHHHHHHHHHccccccc //